Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 5e-19
seq3 104 2e-17
seq7 91.5 1e-13
>seq1
Length=5232100
Score = 109 bits (120), Expect = 5e-19
Identities = 340/524 (65%), Gaps = 27/524 (5%)
Strand=Plus/Minus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| | ||||| ||||| ||||||||||||| ||||| | | | | ||
Sbjct 3073550 GTTCCCTGCATCCGCAAGAAGGCCGAGTGGGCAATGAAATGGATATCTGACAAGAGCTCC 3073491
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG--GCA 52443
|| | || ||| | || ||||| ||| |||||||| | |||| ||| | |
Sbjct 3073490 ACCTTCGCGTCGCGTCTTGTAGCCTTTGCCGCTGTCGAGGG--TATTTTCTTCAGTGGAT 3073433
Query 52444 GCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503
||| || ||||||| | | || | | || | |||||||||||||| ||| |
Sbjct 3073432 CCTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGA 3073373
Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC---- 52559
| || | || || || || || || ||||||| ||||| || |||||| || |
Sbjct 3073372 ATGAACTCATCTCTCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTCCC 3073313
Query 52560 -----AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGG 52614
|| || ||| | | | || || ||| ||| || ||| |
Sbjct 3073312 TTCTCAACACACGCCCAAGCAAGAAGGAGG--TCGAGCAC----------ATCATCACCG 3073265
Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674
||||||| ||||| | ||||| | || | || ||||| || |||||| || |
Sbjct 3073264 AGGCGGTCAAGATCGAGCAAGAGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTA 3073205
Query 52675 TGAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733
||||| | ||| |||||| | ||||||||||| || || || || ||| | ||
Sbjct 3073204 TGAACTCTG-GTCTGATGTGCCAATACATCGAGTTCGTCGCCGACCGCCTGCTATTGTCT 3073146
Query 52734 CTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
||||| | || ||| | |||||| ||| || || || || ||| | ||||| ||
Sbjct 3073145 CTCGGCAATCCCAAGGTTTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCC 3073086
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| | |||||||||||||| ||||||||||| ||||| || ||
Sbjct 3073085 TTGGCCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTA 3073042
>seq3
Length=4703234
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | || || || | | |||||||||| || |||||||||||||||
Sbjct 3808732 CCACCGCGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTC 3808673
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| || || || |||| |||| ||||||||||| ||||| ||
Sbjct 3808672 AACGTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGGGGG 3808613
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | || |||| || || |||
Sbjct 3808612 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCGGATGATTCAACC 3808553
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | || || || || || || || || ||||| |||||
Sbjct 3808552 TCAAGCGTAATGGTCTTGCCGGTAAGCGTCTTGACGAAAATTTGCAT 3808506
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| ||| | || || || | | | || ||||| ||||||||||| |||
Sbjct 3808960 CCGCCACGCAGACGGAGCACCAAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATCGGAG 3808901
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||| ||||| || || || | |||| || ||||| |||||||| ||
Sbjct 3808900 AGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGGTGGG 3808841
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | ||||||| | ||||| |||
Sbjct 3808840 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACC 3808781
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| ||| | || || || |||||||| || || || || |||||
Sbjct 3808780 TCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3808734
Score = 102 bits (112), Expect = 8e-17
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || |||| | | |||||||| || ||||||||||||
Sbjct 3808504 CCACCGCGTAGACGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3808445
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||| ||||| || || || | |||| ||||||||||| ||||||||
Sbjct 3808444 AGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGA 3808385
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || |||| || | ||| || | || || |
Sbjct 3808384 ATGCCCTCCTTGTC-CTGAATCTTCGACTTGACATTG-TCAATGGTATCCGATGATTCAA 3808327
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| ||| | ||| || || |||| || || || || ||||||||
Sbjct 3808326 CCTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808278
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || |||||||| || || || |
Sbjct 3808243 GACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 3808184
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || |||||||| |||||||| || || || ||||| ||| || || |
Sbjct 3808183 AAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACG 3808124
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||| || | || |||||||||| ||| | ||| || || |||| || ||
Sbjct 3808123 TTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTG 3808064
Query 138601 ACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 3808063 ACGAAGATCTGCATG 3808049
>seq7
Length=3010262
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| |||| ||| | || | ||| | | |||||||| || |||||||| |||||
Sbjct 2377811 GCCGCCACGCAGACGAAGGACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCT 2377870
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||||||||| || || || | |||| |||||||||||||| || ||
Sbjct 2377871 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGGGG 2377930
Query 138507 TATACCTTCTTTGTC 138521
|| |||||||||||
Sbjct 2377931 GATGCCTTCTTTGTC 2377945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262089836000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |