Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 132 6e-26 seq1 105 8e-18 >seq4 Length=3241893 Score = 132 bits (146), Expect = 6e-26 Identities = 360/539 (67%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACA 116807 ||||| || ||||||||||| ||||| || ||||| | ||| | || | || ||| Sbjct 827314 CTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAGC 827373 Query 116808 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 116867 |||| ||||||| | || ||||| || | || | ||| | | | || ||||| Sbjct 827374 GCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGTG 827433 Query 116868 CCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGAC--CAGCCTGGTTTA-CATA 116924 ||| || |||||||| | || | | || ||| | |||| | | | |||| Sbjct 827434 CCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCTTGATCAACATA 827493 Query 116925 CCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT 116984 ||| || || ||| | || |||||||| || |||| ||| | || ||||||||| Sbjct 827494 CCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTGT 827553 Query 116985 CCCCCGAATACGAGACTTGTTGGCTCTGACATC--GTGGATGTGCATACCAATACCCCCT 117042 || | ||| | | | | || | || ||| ||||| | || ||||||||| ||| Sbjct 827554 TCCACCAATGTAGGCCCCGGTAGCAC-GA-ATCCGGTGGACATTCAGACCAATACCGCCT 827611 Query 117043 GCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA 117102 || || ||||| |||||| | | || || | ||||| || ||||| ||| Sbjct 827612 GCGGTTTTGGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCC 827671 Query 117103 CCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAG 117162 |||| | |||||||||||||| |||||||| ||| ||| || || || |||||| Sbjct 827672 TCCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGGGTCCCCGCATTGAAG 827731 Query 117163 AGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCA-AG 117219 ||||| || | ||||| |||| || |||| ||||| | || ||| ||||| | | Sbjct 827732 AGGGTCGGCGAAGCGTGTGTGAA-GTA-CTTGCTCGACATGTAATTGTATGTCTCAATTG 827789 Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 | | | |||||||| || || || |||| || || ||||| | ||||| ||| || Sbjct 827790 CCTTATCG-ATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCATGTGTTGTGG 827847 Score = 123 bits (136), Expect = 3e-23 Identities = 303/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 ||| | | ||| ||||||||||| ||||||||||| || ||||||| || | ||| Sbjct 826066 GCCATCGTTCGAAGGTAGTACATGCCCGTCTTGAGACCGAGCTTCCACCCAGCAAAGTGC 826125 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668 || |||| | |||| | || || | |||| || || | | || || || Sbjct 826126 ATAGAGGTGATCTTGCCCATGGTAGGTTCCTTCATGTGGATATTGAGAGACTGAGACTGG 826185 Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 115728 ||||||||| || ||||| || ||||| | | | || || |||||||||| Sbjct 826186 TCGATGAAGGCGCCACGATCTGCAGCCATCTGCAGGATATGTCTCTGTGAGATTTCCCAC 826245 Query 115729 ACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCA 115788 ||||| ||||||| || |||||||| ||||| | ||| || ||||||||| Sbjct 826246 ACAGTCTTGTAGAGTGCTTTGATATCATCGGGGATGTTGGGGATCCGCTGAATAGAGCCA 826305 Query 115789 CCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCC 115848 ||| | || || || |||||| | | ||||| | || || | ||||| Sbjct 826306 CCTTCGGCGATGATCCTATTCTTCATGTTGTCGGACCACAAGCCCATGTCGACAAGATCT 826365 Query 115849 T----CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 115904 | | || ||| |||||| | ||||| || ||||| || | || Sbjct 826366 TTGAGCAACCAGGG----ATTGACGATCTGGAACTCGCCAGCGAGAACACGGCGGGAGTA 826421 Query 115905 GATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGC 115964 |||||||| || || ||||||||||| || |||||||| | || || | ||| ||||| Sbjct 826422 GATGTTGGAGGTATAAGGCTCAAAGCATTCGTTGTTACCGAGAATCTGAGATGTAGAGGC 826481 Query 115965 TGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || ||||| || |||| ||||||| ||||||||| || Sbjct 826482 AGTCGGCATAGGAGCCACGAGAAGGGAGTTGCGGAGGCC 826520 >seq1 Length=5232100 Score = 105 bits (116), Expect = 8e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| ||||| ||||||||||||||||||||| ||| || ||||||||||| |||||| Sbjct 3073348 CCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGGGCATGAGACCGCGCTTC 3073407 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || ||| |||||| || ||||| ||| || || Sbjct 3073408 TTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAAATACCCTCGACAGCGGCAAAG 3073467 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | |||||| || |||| | | ||| | | ||| ||||| ||||||| Sbjct 3073468 GCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGATATCCATTTCATTGCCCACTCG 3073527 Query 127718 GCCTTTTT 127725 ||||| || Sbjct 3073528 GCCTTCTT 3073535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506816558000