Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4 132 6e-26
seq1 105 8e-18
>seq4
Length=3241893
Score = 132 bits (146), Expect = 6e-26
Identities = 360/539 (67%), Gaps = 13/539 (2%)
Strand=Plus/Plus
Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACA 116807
||||| || ||||||||||| ||||| || ||||| | ||| | || | || |||
Sbjct 827314 CTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAGC 827373
Query 116808 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 116867
|||| ||||||| | || ||||| || | || | ||| | | | || |||||
Sbjct 827374 GCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGTG 827433
Query 116868 CCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGAC--CAGCCTGGTTTA-CATA 116924
||| || |||||||| | || | | || ||| | |||| | | | ||||
Sbjct 827434 CCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCTTGATCAACATA 827493
Query 116925 CCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT 116984
||| || || ||| | || |||||||| || |||| ||| | || |||||||||
Sbjct 827494 CCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTGT 827553
Query 116985 CCCCCGAATACGAGACTTGTTGGCTCTGACATC--GTGGATGTGCATACCAATACCCCCT 117042
|| | ||| | | | | || | || ||| ||||| | || ||||||||| |||
Sbjct 827554 TCCACCAATGTAGGCCCCGGTAGCAC-GA-ATCCGGTGGACATTCAGACCAATACCGCCT 827611
Query 117043 GCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA 117102
|| || ||||| |||||| | | || || | ||||| || ||||| |||
Sbjct 827612 GCGGTTTTGGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCC 827671
Query 117103 CCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAG 117162
|||| | |||||||||||||| |||||||| ||| ||| || || || ||||||
Sbjct 827672 TCCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGGGTCCCCGCATTGAAG 827731
Query 117163 AGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCA-AG 117219
||||| || | ||||| |||| || |||| ||||| | || ||| ||||| | |
Sbjct 827732 AGGGTCGGCGAAGCGTGTGTGAA-GTA-CTTGCTCGACATGTAATTGTATGTCTCAATTG 827789
Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278
| | | |||||||| || || || |||| || || ||||| | ||||| ||| ||
Sbjct 827790 CCTTATCG-ATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCATGTGTTGTGG 827847
Score = 123 bits (136), Expect = 3e-23
Identities = 303/459 (66%), Gaps = 8/459 (2%)
Strand=Plus/Plus
Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608
||| | | ||| ||||||||||| ||||||||||| || ||||||| || | |||
Sbjct 826066 GCCATCGTTCGAAGGTAGTACATGCCCGTCTTGAGACCGAGCTTCCACCCAGCAAAGTGC 826125
Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668
|| |||| | |||| | || || | |||| || || | | || || ||
Sbjct 826126 ATAGAGGTGATCTTGCCCATGGTAGGTTCCTTCATGTGGATATTGAGAGACTGAGACTGG 826185
Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 115728
||||||||| || ||||| || ||||| | | | || || ||||||||||
Sbjct 826186 TCGATGAAGGCGCCACGATCTGCAGCCATCTGCAGGATATGTCTCTGTGAGATTTCCCAC 826245
Query 115729 ACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCA 115788
||||| ||||||| || |||||||| ||||| | ||| || |||||||||
Sbjct 826246 ACAGTCTTGTAGAGTGCTTTGATATCATCGGGGATGTTGGGGATCCGCTGAATAGAGCCA 826305
Query 115789 CCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCC 115848
||| | || || || |||||| | | ||||| | || || | |||||
Sbjct 826306 CCTTCGGCGATGATCCTATTCTTCATGTTGTCGGACCACAAGCCCATGTCGACAAGATCT 826365
Query 115849 T----CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 115904
| | || ||| |||||| | ||||| || ||||| || | ||
Sbjct 826366 TTGAGCAACCAGGG----ATTGACGATCTGGAACTCGCCAGCGAGAACACGGCGGGAGTA 826421
Query 115905 GATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGC 115964
|||||||| || || ||||||||||| || |||||||| | || || | ||| |||||
Sbjct 826422 GATGTTGGAGGTATAAGGCTCAAAGCATTCGTTGTTACCGAGAATCTGAGATGTAGAGGC 826481
Query 115965 TGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003
|| ||||| || |||| ||||||| ||||||||| ||
Sbjct 826482 AGTCGGCATAGGAGCCACGAGAAGGGAGTTGCGGAGGCC 826520
>seq1
Length=5232100
Score = 105 bits (116), Expect = 8e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
||||| ||||| ||||||||||||||||||||| ||| || ||||||||||| ||||||
Sbjct 3073348 CCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGGGCATGAGACCGCGCTTC 3073407
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | |||||| || | || || ||| |||||| || ||||| ||| || ||
Sbjct 3073408 TTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAAATACCCTCGACAGCGGCAAAG 3073467
Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717
|| | |||||| || |||| | | ||| | | ||| ||||| |||||||
Sbjct 3073468 GCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGATATCCATTTCATTGCCCACTCG 3073527
Query 127718 GCCTTTTT 127725
||||| ||
Sbjct 3073528 GCCTTCTT 3073535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506816558000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |