Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 1e-24
seq8 105 2e-17
seq7 87.8 4e-12
>seq3
Length=4703234
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || |||||||| |||| ||||||||| | | || | |||||
Sbjct 3808261 AGGACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCC 3808202
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||||||||| ||||| || |||||| || || || |||
Sbjct 3808201 TCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCC 3808142
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||| |||| ||| || | || ||| || || | ||||||||||
Sbjct 3808141 TGGATCTTCGACTTCACGTTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTC 3808082
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || || || || ||
Sbjct 3808081 TTGCCGGTCAAGGTCTTGACGAAGATCTG 3808053
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| |||| ||||||||| ||| || | |||||
Sbjct 3808717 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGGCCATCC 3808658
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||||||||||||||||||||| || ||||| || || || |||
Sbjct 3808657 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCC 3808598
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| || || | || ||| || || | ||| || |||
Sbjct 3808597 TGGATCTTCGACTTGACGTTGTCGATAGTATCGGATGATTCAACCTCAAGCGTAATGGTC 3808538
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || ||||||||
Sbjct 3808537 TTGCCGGTAAGCGTCTTGACGAAAATTTG 3808509
Score = 122 bits (134), Expect = 2e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| |||||||||||||| |||| ||||||||| | | || | ||||||
Sbjct 3808033 AGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCT 3807974
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| | |||||||||||||| || || || |||
Sbjct 3807973 TCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 3807914
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| |||| ||||| | | || || || | ||||| |||
Sbjct 3807913 TGGATCTTGGACTTCACATTGTCGATTGTGTCAGAGGACTCCACCTCGAGGGTGATGGTC 3807854
Query 199598 TTACCCGTGA 199607
|| || ||||
Sbjct 3807853 TTGCCGGTGA 3807844
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| |||| ||||||||| | | ||| | || |||
Sbjct 3808489 AGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCT 3808430
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||||||||||||||| || |||||| ||| || || |||
Sbjct 3808429 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCC 3808370
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || || | ||| || | || ||| || || | ||| ||||||
Sbjct 3808369 TGAATCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACCTCGAGCGTAATCGTC 3808310
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || || || || ||
Sbjct 3808309 TTGCCGGTCAAGGTCTTGACGAAGATCTG 3808281
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || ||||| ||||| || | |||||| || | | ||| | || |||
Sbjct 3808945 AGCACCAAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGGCCGTCT 3808886
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||||||||| |||||||||||||| || || || |||
Sbjct 3808885 TCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 3808826
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || || | ||| || |||
Sbjct 3808825 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACCTCGAGCGTAATGGTC 3808766
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| || || || |||||
Sbjct 3808765 TTGCCGGTCAGAGTCTTGACGAAGATTTG 3808737
>seq8
Length=2851179
Score = 105 bits (116), Expect = 2e-17
Identities = 84/101 (83%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| ||||||||||| |||| ||||||||| | | || | || |||
Sbjct 895277 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 895218
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
||||||||||||||||||||||| | ||||||||||| ||
Sbjct 895217 TCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGG 895177
>seq7
Length=3010262
Score = 87.8 bits (96), Expect = 4e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || || ||||||||||| |||| |||||| || | || | || ||
Sbjct 2377827 AGGACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCC 2377886
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||||||||||||||| ||||| || || |||||| |||
Sbjct 2377887 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGGGGGATGCCTTCTTTGTCC 2377946
Query 199538 TGAATCTT 199545
|| |||||
Sbjct 2377947 TGGATCTT 2377954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178920844753350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |