Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq8 105 2e-17 seq7 87.8 4e-12 >seq3 Length=4703234 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 3808261 AGGACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCC 3808202 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| ||||| || |||||| || || || ||| Sbjct 3808201 TCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCC 3808142 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | || ||| || || | |||||||||| Sbjct 3808141 TGGATCTTCGACTTCACGTTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTC 3808082 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 3808081 TTGCCGGTCAAGGTCTTGACGAAGATCTG 3808053 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| ||| || | ||||| Sbjct 3808717 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGGCCATCC 3808658 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||||||||| || ||||| || || || ||| Sbjct 3808657 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCC 3808598 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | || ||| || || | ||| || ||| Sbjct 3808597 TGGATCTTCGACTTGACGTTGTCGATAGTATCGGATGATTCAACCTCAAGCGTAATGGTC 3808538 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || |||||||| Sbjct 3808537 TTGCCGGTAAGCGTCTTGACGAAAATTTG 3808509 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| |||||||||||||| |||| ||||||||| | | || | |||||| Sbjct 3808033 AGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCT 3807974 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | |||||||||||||| || || || ||| Sbjct 3807973 TCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 3807914 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||||| | | || || || | ||||| ||| Sbjct 3807913 TGGATCTTGGACTTCACATTGTCGATTGTGTCAGAGGACTCCACCTCGAGGGTGATGGTC 3807854 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 3807853 TTGCCGGTGA 3807844 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | | ||| | || ||| Sbjct 3808489 AGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCT 3808430 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||||||||| || |||||| ||| || || ||| Sbjct 3808429 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCC 3808370 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||| || | || ||| || || | ||| |||||| Sbjct 3808369 TGAATCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACCTCGAGCGTAATCGTC 3808310 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 3808309 TTGCCGGTCAAGGTCTTGACGAAGATCTG 3808281 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||| ||||| || | |||||| || | | ||| | || ||| Sbjct 3808945 AGCACCAAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGGCCGTCT 3808886 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| |||||||||||||| || || || ||| Sbjct 3808885 TCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 3808826 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||| || ||| Sbjct 3808825 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACCTCGAGCGTAATGGTC 3808766 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || ||||| Sbjct 3808765 TTGCCGGTCAGAGTCTTGACGAAGATTTG 3808737 >seq8 Length=2851179 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | | || | || ||| Sbjct 895277 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 895218 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||||||||||||||| | ||||||||||| || Sbjct 895217 TCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGG 895177 >seq7 Length=3010262 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || ||||||||||| |||| |||||| || | || | || || Sbjct 2377827 AGGACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCC 2377886 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||||||||| ||||| || || |||||| ||| Sbjct 2377887 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGGGGGATGCCTTCTTTGTCC 2377946 Query 199538 TGAATCTT 199545 || ||||| Sbjct 2377947 TGGATCTT 2377954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920844753350