Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-30 seq8 107 2e-18 seq7 91.5 2e-13 >seq3 Length=4703234 Score = 145 bits (160), Expect = 9e-30 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| ||||| ||||| || |||| |||||||||||||| ||||| Sbjct 3808924 TCCTTCTGAATGTTGTAATCGGAGAGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 3808865 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | || |||||||||| ||||||| ||||| ||| Sbjct 3808864 ATGAGCCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTT 3808806 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| || || || || | ||| ||||| ||||| ||||| || || || Sbjct 3808805 GTCGATGGTGTCGCTGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGAC 3808746 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 3808745 GAAGATTTGCAT 3808734 Score = 129 bits (142), Expect = 7e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || || | |||| |||||| ||||| |||||||||||||| ||||| | || ||| Sbjct 3808258 ACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCG 3808199 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| || | ||||| || || | || | || |||||||||| | Sbjct 3808198 AGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCCTGG 3808139 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | || || |||||||| || | |||||| || || Sbjct 3808138 ATCTTCGACTTCA-CGTTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTCTT 3808080 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 3808079 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808050 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||||||| ||||| | || || ||||||||||||||||| Sbjct 3808013 CTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 3807954 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | ||| | || |||||||||| |||||| ||| | | Sbjct 3807953 GATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 3807894 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | ||||| || ||||| || | |||||||| ||||| || Sbjct 3807893 GTCGATTGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 3807846 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| |||||||||||||| ||||| Sbjct 3808469 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAA 3808410 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| || || | || | || |||||||||| |||||| ||||| | Sbjct 3808409 GATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 3808350 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||||| || || | ||| || || ||||| |||| || || || Sbjct 3808349 GTCAATGGTATCCGATGATTCAACCTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGAC 3808290 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 3808289 GAAGATCTGCAT 3808278 >seq8 Length=2851179 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || |||||||| |||||||| Sbjct 895257 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAA 895198 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||||||||| | || | || ||||||||| Sbjct 895197 GATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 895159 >seq7 Length=3010262 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||||| || |||||| ||||| ||||| ||| || ||||| |||| ||| Sbjct 2377830 ACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCG 2377889 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| || | ||||| ||||||| || | || || |||||| | Sbjct 2377890 AGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGGGGGATGCCTTCTTTGTCCTGG 2377949 Query 46505 ATCTT 46509 ||||| Sbjct 2377950 ATCTT 2377954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238046726000