Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 seq1 152 5e-32 seq7 138 1e-27 seq8 93.3 4e-14 >seq3 Length=4703234 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| ||||| || |||| |||||| ||| | Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| || || | ||||| Sbjct 3808794 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 3808852 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||||||||| | ||||||||| ||||| || |||| || || ||| ||| ||||| Sbjct 3808853 GCAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAA 3808912 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || |||||| |||| ||||| |||||||| ||| || | ||||| Sbjct 3808913 CATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || ||||| ||||| || | || || || | || Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || || |||| ||||| ||||| || ||| | || || Sbjct 3808566 GATACTATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 3808624 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || || ||||| || || | || || | | ||||||||| Sbjct 3808625 ACAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGCGACTACAA 3808684 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || |||||||| ||| || | || || Sbjct 3808685 CATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGCGGTGG 3808732 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| ||||| | || |||||||| ||||| | ||||||||| ||||| || Sbjct 3808371 GACAAGGAGGGCATTCCTCCGGATCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAA 3808430 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || || ||| ||||||||||||||| ||||| | || || || |||||||| Sbjct 3808431 GACGGCCGAACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTACACTTGGTGCTC 3808490 Query 38457 CGT 38459 ||| Sbjct 3808491 CGT 3808493 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| |||| || ||| || | |||| | | | | || Sbjct 3807844 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGT 3807903 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || ||||||| |||| ||||| | || | ||| ||| Sbjct 3807904 CCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGC 3807962 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || |||||||| || | |||||||| ||||||||||||||| ||||| |||| || Sbjct 3807963 AAGCAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTT 3808022 Query 38445 CATTTGGTGCTGCGT 38459 || | || || ||| Sbjct 3808023 CACCTCGTCCTTCGT 3808037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| |||| || || | | Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| ||||| || || | || || Sbjct 3808110 GATACCATCGACAACG-TGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 3808168 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 3808169 ACAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAA 3808228 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 3808229 CATCCAGAAGGA 3808240 >seq1 Length=5232100 Score = 152 bits (168), Expect = 5e-32 Identities = 202/277 (73%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| | ||| ||| | |||||||| | ||||||||| ||| || || Sbjct 3073652 GTATGTGTCGATCAACAGCGAGTACGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAA 3073711 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGAT 133285 ||| || ||||| |||||||| | || || || || ||| ||||||||||||| Sbjct 3073712 GCCATAGAAGCATCGCGCCTCTGGTATTTGTACCTCGCC-GCTAAAGCGCTCGACCAGAT 3073770 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | |||||||||||||||||| |||||||| ||||| || ||||| ||||| || Sbjct 3073771 TCTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGACGTGTGAAATGAAGAAGC 3073830 Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||| | ||| || | | | | ||||||| | ||| ||||| || || | ||| | Sbjct 3073831 GCTCATCGTCATTGAGCCTCTTGTTCCAGTCGTGAAGGTCTTTGGAGAGATCGATCTCTT 3073890 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || ||||||| || || || ||||| || |||||||| Sbjct 3073891 CGGCGGTCCAGAAGGAAGCTTCGGCCTTCTTGTACAT 3073927 Score = 150 bits (166), Expect = 2e-31 Identities = 321/474 (68%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| | || || || || || || ||||| || || || || || || | Sbjct 3073023 CATGACGCCAGACTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3073082 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 |||||| ||| | ||| || || |||||||||| | |||||| ||||| |||| Sbjct 3073083 CAAGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTGGGATTGCC 3073142 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || | | | ||||| | |||||| ||||||||||||||||| |||| | | Sbjct 3073143 GAGA--GACAAT-AGCAGGCGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGA 3073199 Query 132768 ATTAAGTCCCAGCAG-ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || ||||| |||| ||||| || |||||||| || ||||||||| || Sbjct 3073200 GTTCATACCGAGCAGCGCGCA-AGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGA 3073258 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 |||| ||||||| ||| | | || | | ||| || ||| | | | || Sbjct 3073259 CCGCCTCGGTGATGATGTGCTCGACCTCCTTCTTGCTTGGGCGTGTGTTGAGAAGGGAGA 3073318 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| || |||||| |||| |||||| || | || |||||||| || || Sbjct 3073319 AGAGGAGGCAGGCGAAGTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGA 3073378 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | |||| |||||||||||| ||||| || |||||||| || |||| ||||| || Sbjct 3073379 AGGTCAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCAC 3073438 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060 ||||| | |||||||| || || || || || || ||| |||| |||| Sbjct 3073439 TGAAGAAAATACCCTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGG 3073492 >seq7 Length=3010262 Score = 138 bits (152), Expect = 1e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| |||||||| || || ||| ||||||||||||| ||||| | ||||||||| Sbjct 2377954 AAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAACAGCGTCTCATCTTCGCGGGCAAG 2377895 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| |||| ||| ||||||||||| ||||| ||||||||||| Sbjct 2377894 CAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATCCAGAAGGAGTCGACGCTGCAT 2377835 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||| || | |||||| Sbjct 2377834 CTGGTCCTTCGTCTGCGTGGCGGC 2377811 >seq8 Length=2851179 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| | || | ||| || || |||||||| Sbjct 895159 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAA 895218 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| |||||||| ||||||||||||||| ||||| |||| || || | || || Sbjct 895219 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTCCTT 895278 Query 38457 CGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 895279 CGTCTGCGTGGAGG 895292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172487392000