Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 4e-33
seq1 152 5e-32
seq7 138 1e-27
seq8 93.3 4e-14
>seq3
Length=4703234
Score = 156 bits (172), Expect = 4e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || ||||| ||||| || |||| |||||| ||| |
Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| || || | |||||
Sbjct 3808794 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 3808852
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||||||||| | ||||||||| ||||| || |||| || || ||| ||| |||||
Sbjct 3808853 GCAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAA 3808912
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| || |||||| |||| ||||| |||||||| ||| || | |||||
Sbjct 3808913 CATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||||| || ||||| ||||| || | || || || | ||
Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | |||| | || || |||| ||||| ||||| || ||| | || ||
Sbjct 3808566 GATACTATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 3808624
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| || || ||||| || || | || || | | |||||||||
Sbjct 3808625 ACAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGCGACTACAA 3808684
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || |||||||| ||| || | || ||
Sbjct 3808685 CATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGCGGTGG 3808732
Score = 105 bits (116), Expect = 7e-18
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| ||||| | || |||||||| ||||| | ||||||||| ||||| ||
Sbjct 3808371 GACAAGGAGGGCATTCCTCCGGATCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAA 3808430
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || || ||| ||||||||||||||| ||||| | || || || ||||||||
Sbjct 3808431 GACGGCCGAACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTACACTTGGTGCTC 3808490
Query 38457 CGT 38459
|||
Sbjct 3808491 CGT 3808493
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| ||||| ||||||||| |||| || ||| || | |||| | | | | ||
Sbjct 3807844 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGT 3807903
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| ||||| || ||||||| |||| ||||| | || | ||| |||
Sbjct 3807904 CCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGC 3807962
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| |||||||| || | |||||||| ||||||||||||||| ||||| |||| ||
Sbjct 3807963 AAGCAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTT 3808022
Query 38445 CATTTGGTGCTGCGT 38459
|| | || || |||
Sbjct 3808023 CACCTCGTCCTTCGT 3808037
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| || ||||| |||| || || | |
Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || |||| ||||| ||||| || || | || ||
Sbjct 3808110 GATACCATCGACAACG-TGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 3808168
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| ||||| ||||| || || | |||||||| |||||||||
Sbjct 3808169 ACAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAA 3808228
Query 38423 CATCCAAAAGGA 38434
|||||| |||||
Sbjct 3808229 CATCCAGAAGGA 3808240
>seq1
Length=5232100
Score = 152 bits (168), Expect = 5e-32
Identities = 202/277 (73%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| |||||||| | ||| ||| | |||||||| | ||||||||| ||| || ||
Sbjct 3073652 GTATGTGTCGATCAACAGCGAGTACGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAA 3073711
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGAT 133285
||| || ||||| |||||||| | || || || || ||| |||||||||||||
Sbjct 3073712 GCCATAGAAGCATCGCGCCTCTGGTATTTGTACCTCGCC-GCTAAAGCGCTCGACCAGAT 3073770
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| |||||||||||||||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 3073771 TCTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGACGTGTGAAATGAAGAAGC 3073830
Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||| | ||| || | | | | ||||||| | ||| ||||| || || | ||| |
Sbjct 3073831 GCTCATCGTCATTGAGCCTCTTGTTCCAGTCGTGAAGGTCTTTGGAGAGATCGATCTCTT 3073890
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| ||||||| || || || ||||| || ||||||||
Sbjct 3073891 CGGCGGTCCAGAAGGAAGCTTCGGCCTTCTTGTACAT 3073927
Score = 150 bits (166), Expect = 2e-31
Identities = 321/474 (68%), Gaps = 8/474 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| |||||| | || || || || || || ||||| || || || || || || |
Sbjct 3073023 CATGACGCCAGACTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3073082
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707
|||||| ||| | ||| || || |||||||||| | |||||| ||||| ||||
Sbjct 3073083 CAAGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTGGGATTGCC 3073142
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
|| | | | ||||| | |||||| ||||||||||||||||| |||| | |
Sbjct 3073143 GAGA--GACAAT-AGCAGGCGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGA 3073199
Query 132768 ATTAAGTCCCAGCAG-ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || ||||| |||| ||||| || |||||||| || ||||||||| ||
Sbjct 3073200 GTTCATACCGAGCAGCGCGCA-AGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGA 3073258
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
|||| ||||||| ||| | | || | | ||| || ||| | | | ||
Sbjct 3073259 CCGCCTCGGTGATGATGTGCTCGACCTCCTTCTTGCTTGGGCGTGTGTTGAGAAGGGAGA 3073318
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | | ||| || |||||| |||| |||||| || | || |||||||| || ||
Sbjct 3073319 AGAGGAGGCAGGCGAAGTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGA 3073378
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| |||| |||||||||||| ||||| || |||||||| || |||| ||||| ||
Sbjct 3073379 AGGTCAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCAC 3073438
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060
||||| | |||||||| || || || || || || ||| |||| ||||
Sbjct 3073439 TGAAGAAAATACCCTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGG 3073492
>seq7
Length=3010262
Score = 138 bits (152), Expect = 1e-27
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| |||||||| || || ||| ||||||||||||| ||||| | |||||||||
Sbjct 2377954 AAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAACAGCGTCTCATCTTCGCGGGCAAG 2377895
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| |||| ||| ||||||||||| ||||| |||||||||||
Sbjct 2377894 CAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATCCAGAAGGAGTCGACGCTGCAT 2377835
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
|||| || ||| || | ||||||
Sbjct 2377834 CTGGTCCTTCGTCTGCGTGGCGGC 2377811
>seq8
Length=2851179
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| | || | ||| || || ||||||||
Sbjct 895159 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAA 895218
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| |||||||| ||||||||||||||| ||||| |||| || || | || ||
Sbjct 895219 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTCCTT 895278
Query 38457 CGTTTGAGAGGCGG 38470
||| || | || ||
Sbjct 895279 CGTCTGCGTGGAGG 895292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172487392000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |