Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 228 1e-54 seq4 95.1 2e-14 >seq3 Length=4703234 Score = 228 bits (252), Expect = 1e-54 Identities = 461/676 (68%), Gaps = 11/676 (2%) Strand=Plus/Plus Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 ||| | |||| |||||||| ||||| || || | |||||| | |||| | Sbjct 4305291 AAAAACCTTT-TTATGTTTGCGTTTGAATTCCATTGTGAAGTGGTTCACAAGTCGGTTGT 4305349 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || || || ||||| || || || || ||||| | ||||| || ||||| || Sbjct 4305350 CGAAGTCCTCGCCGCCCAAATGAGTGTCGCCGGCGGTGGACTTGACCTCGAAGATGCCCT 4305409 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | || ||| | | || ||| || || || || || || || ||||| || ||||| |||| Sbjct 4305410 CCTCGATGGTCAGCAGCGACACGTCGAAGGTGCCGCCGCCGAGGTCGAAGATGAGCACGT 4305469 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | ||| || | | ||||| ||||| ||||| || || || || || || || || | Sbjct 4305470 TGCGCTCGCCGACCTGCTTCTTGTCGAGGCCGTAGGCAATGGCGGCGGCGGTCGGCTCGT 4305529 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAAT-AGTTGCCG-CATCTTTCGTCGCTTGTCG 7695 | || || || || ||||||||| || || || |||| | || || || || || || Sbjct 4305530 TGATGATGCGCAGCACGTTCAGGCCCGCGATCAG--GCCGGCGTCCTTGGTGGCCTGGCG 4305587 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| ||||| |||||||||||||| || ||||| |||| |||| | || || Sbjct 4305588 CTGCGAGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTTGTTGACGGTGCCGCCCAG 4305647 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||||| || ||| | || ||| ||||| || ||||| || || ||||| || | | Sbjct 4305648 GTACGACTCGGCGGTCTCGCGCATCTTGGTCAGGACCATGGACGAGATCTCCTCGGGGGT 4305707 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 ||| ||| || || || || || || | |||| ||| || |||| | | Sbjct 4305708 GAACGTCTTCTGCTCGCCCTTGAACTCGACCTGGATCACGGGCTT-GCCGC--CCTTGTC 4305764 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| ||| | | ||||| ||| | ||||||| ||| | ||||| | Sbjct 4305765 GATGACCTTGAACGGGAAGTGCTTCATGTCGGCCTGGACCTCGGCGTCGGCGAACTTGCG 4305824 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| || ||||| || || || || ||||| |||||||||||| |||||||| Sbjct 4305825 GCCGATGAGGCGCTTGGCGTCGAAGACGGTGTTGGCGGGGTTCATGGCGACCTGGTTCTT 4305884 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||||| ||| ||||| || || || | || || || || ||| | || ||||| || Sbjct 4305885 CGCCGAGTCGCCGATCAGGCGCTC---CGTGTCGGTGAAGGCCACGAAGGACGGGGTGGT 4305941 Query 8056 TCGATTCCCTTGGTCG 8071 || || || |||||| Sbjct 4305942 GCGGTTGCCCTGGTCG 4305957 Score = 215 bits (238), Expect = 7e-51 Identities = 378/543 (70%), Gaps = 17/543 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | | |||||| | || ||| | | |||||| Sbjct 1808350 TCCTCGAAACGAGCACGGGTGATGTTGGAGTTGAAATCCTCACCATCGAAGAGCGAATCG 1808291 Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 || |||| || ||||| | ||| | || | ||||||||| || ||||| || || | Sbjct 1808290 ATCTCAACAGTGGTTTGCGTAGCGTTG--GAAAGCGTTCGCTTAGCACGCTCGCAAGCGG 1808233 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT-TA 7423 | || | |||||| ||||| || | | || || | ||| ||||| || | | | | Sbjct 1808232 TCCGGAGACGACGGAGGGCTCGGGCATCGCCTGAGAGATCCTTCTTC-GTCTTCTTGGTG 1808174 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 ||||| | |||||| ||| || | | ||||||||||| |||||||||||| || Sbjct 1808173 AACTCCTTCTTGAAGTGATCAAGCAGATTGGTATCGAAATCTTGACCACCCAAGTGGGTG 1808114 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || ||||| || || || |||| |||||| | ||||| | || || ||||| Sbjct 1808113 TCACCAGCGGTGGCCTTCACGGTGAAGACACCTCCCTGAATGTGCAGCAGGGACACATCG 1808054 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTT--- 7599 || || |||||||||| ||| | ||||| || ||| || || | || | ||| Sbjct 1808053 AAAGTGCCACCACCCAAGTCGTAGATGAGAACATTC----CGCTCCTTTTCGGACTTTCC 1807998 Query 7600 --ATC-GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| |||||| || |||||||| || ||||| || || || ||||| || || ||| Sbjct 1807997 GGATCCGAGACCATAGGCGATAGCGGCGGCCGTGGGCTCGTTGATAATGCGGAGGACGTT 1807938 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 ||||||||||| | | ||||| || || |||||||| || ||||| |||||||| Sbjct 1807937 GAGGCCAGCAATGGCACCAGCATCCTTGGTGGCTTGTCGCTGGTTGTCGTTGAAGTAGGC 1807878 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||||| || | ||| || | | ||| ||| | ||||| | || |||| ||||| Sbjct 1807877 AGGGACGGTGATGACGGCCTTCTCGACCTTCATGCCGAGCTTGACCTCAGCGACCTCTTT 1807818 Query 7777 CAT 7779 ||| Sbjct 1807817 CAT 1807815 >seq4 Length=3241893 Score = 95.1 bits (104), Expect = 2e-14 Identities = 274/420 (65%), Gaps = 5/420 (1%) Strand=Plus/Plus Query 105562 ACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCC 105621 ||||| |||||||||| || |||||||||| || |||| | ||| ||| | | Sbjct 827321 ACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAGCGCGAACT 827380 Query 105622 TCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGT 105681 ||||| | || |||||| || | || || || ||| || |||||||||||||| Sbjct 827381 TCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGTGCCATGGC 827440 Query 105682 TCTAAATAGACTGCAATAGACCCT----TTACGACGCCCCGCTTGATTGACATATCTTGC 105737 || | |||| |||| | ||| | | ||| | |||||| ||||| || || Sbjct 827441 TCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGC-CTTGATCAACATACCTAGC 827499 Query 105738 GGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACG 105797 ||| ||| || || || | ||| || || | ||| | || || ||||||||||||| Sbjct 827500 GGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTGTTCCACC 827559 Query 105798 AATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT 105857 ||| | | | ||||| | ||| || | | |||||||| || || || Sbjct 827560 AATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCAGACCAATACCGCCTGCGGTTTT 827619 Query 105858 ACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATT 105917 ||| || ||| || | ||| || || || || ||||| || || ||||| | Sbjct 827620 GGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCAT 827679 Query 105918 CGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977 | || ||||| || || |||||||| || || || || |||||||| || || || Sbjct 827680 ATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGGGTCCCCGCATTGAAGAGGGTCGG 827739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132403042000