Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 seq5 86.0 7e-12 >seq3 Length=4703234 Score = 102 bits (112), Expect = 1e-16 Identities = 336/517 (65%), Gaps = 19/517 (4%) Strand=Plus/Plus Query 11491 ACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACA 11550 ||||| | | ||||||||||||||| || || || ||||| | ||| | || || | Sbjct 3585310 ACCTGCACATGACGATCGAAACGACCAGGTCGAAGCAGAGCCTTATCCAAGATTTCAGGA 3585369 Query 11551 CGGTTTGTAGCGGCAATGACTACAATGCCAGT-CTCATTGTCGAAACCGTCCATTTCTGT 11609 | || || || || |||| || | || || ||| | ||| || || || | || | Sbjct 3585370 TGATTCGTCGCTGCGATGAATATCACACCGGTGCTC-TGGTCAAAGCCATCAAGGTCATT 3585428 Query 11610 GAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG 11669 || || ||||| | ||||| || | | ||||| || || ||| | Sbjct 3585429 CAGCAGTTGGTTAAGAGTCTGG---CGGTGGTAGTTGG---------CATCTCGCGATTG 3585476 Query 11670 CTTCTTACCG---ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 | || ||| ||||| |||| || || ||||| || || ||| ||||| || Sbjct 3585477 CCGTTTTCCGCCAACAGCATCAAGTTCGTCAATGAAAACAATGGCTGGTGCCTTGGCTCG 3585536 Query 11727 TGCCTGTTC-GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 || || | ||| ||||| || |||||||| || |||||||| || | | ||| ||| Sbjct 3585537 AGCA-GTGCTGAATAGTTCGCGGACACGCTTAGCGCCAACACCAACATATACTTCATCGA 3585595 Query 11786 AGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | | | | || | | ||||||||| || |||||| || | ||| ||||| | Sbjct 3585596 ACTCAGATCCGGACATGTAGAAGAAGGGAACGCCAGCCTCACCCGCAACGGCACGAGCAA 3585655 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | | |||||| || || ||||| | ||| ||| | | |||| ||||| || | | Sbjct 3585656 GCAAAGTCTTTCCGGTTCCAGGGGGCCCAATGAGCAAGACGCCTTTGGGGAGTCTGCCTC 3585715 Query 11906 CACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || | || || || || || |||||||| ||||||| |||| ||||||||||| Sbjct 3585716 CAAGTTTGTTATACCGTTCGGGGTTTTTGAGGAAATCCACAACATCCTGAAGTTCCTCCT 3585775 Query 11966 TGGCGGAGTCGATACCCTCAACATCGGTGAAACGAGT 12002 |||| ||| || | ||||| ||||| || || Sbjct 3585776 TGGCCTCATCGCAGCCTTGTACATCTGTGAAGCGGGT 3585812 >seq5 Length=3199122 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 667463 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 667404 Query 136777 GGGAACA 136783 | || || Sbjct 667403 GTGACCA 667397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975631890000