Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq4 120 4e-22 >seq1 Length=5232100 Score = 138 bits (152), Expect = 1e-27 Identities = 342/505 (68%), Gaps = 22/505 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| || | | | ||||| ||||| Sbjct 3073042 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAAGGAGATGTTCTCCATG 3073101 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGGG-TGGCACCCCAACTTGTTTGAGGAG 117101 ||||| || || || | ||||| ||| |||| | || || || || Sbjct 3073102 AAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTGGGATTGCCGAGAGACAAT----AGCAG 3073157 Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 || || | || |||| ||||| | | ||||| ||||||||||||||| || Sbjct 3073158 GCGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGAGTTCATACCGAGCAGCGC 3073217 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 || || ||||| || || |||| ||| ||| |||| |||||||| | | |||| Sbjct 3073218 GCAAGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGACCGCCTCGGTGATGATGTG 3073277 Query 117222 GTGGA--TAGTT-TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAA 117278 | || | || | | | | | || | || | | | || ||| || ||| || Sbjct 3073278 CTCGACCTCCTTCTTGCTTGGGCGTGTGTTGAGAAGGGAGAAGAGGAGG--CA-GGCGAA 3073334 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || ||| | |||||||| || || || |||||||| |||||| ||||| ||||| Sbjct 3073335 GTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGGGCAT 3073394 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCT 117397 |||||| |||||||| | ||| | || | ||| ||| || || |||||| ||||||| Sbjct 3073395 GAGACCGCGCTTCTTGAGCCAGAAGATGGACGC-GAAGGATCCACTGAAGAAAATACCCT 3073453 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA---AACC 117454 | ||| ||||| || | ||| ||| ||||||| | ||| || | ||||| | || Sbjct 3073454 CGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTG-GAG-CTCT-TGTCAGATATCC 3073510 Query 117455 ATTTCATTGCCCATTTCGCCTTCTT 117479 ||||||||||||| | |||||||| Sbjct 3073511 ATTTCATTGCCCACTCGGCCTTCTT 3073535 >seq4 Length=3241893 Score = 120 bits (132), Expect = 4e-22 Identities = 352/537 (66%), Gaps = 9/537 (2%) Strand=Plus/Plus Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 106839 ||||| || ||||||||||| ||||| |||||||||| | |||| | || | | Sbjct 827314 CTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAGC 827373 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 ||| | ||||| | || || || || | |||||||| | | | || ||||| Sbjct 827374 GCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGTG 827433 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACAT 106955 ||||||||| || |||| || | | || | || | ||| |||||| |||| Sbjct 827434 CCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGC-CTTGATCAACAT 827492 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | | || || ||| | || |||||||| || || | ||| | || ||||||| Sbjct 827493 ACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTG 827552 Query 107016 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 107075 | || | ||| | | || | | |||| | || |||||||| || | Sbjct 827553 TTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCAGACCAATACCGCCTG 827612 Query 107076 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 107135 | || ||||| || ||| | | || || ||||||| || | ||| ||||| Sbjct 827613 CGGTTTTGGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCCT 827672 Query 107136 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 107195 |||| | |||| |||||||| |||||| || || ||| || || |||||||||| Sbjct 827673 CCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGGGTCCCCGCATTGAAGA 827732 Query 107196 GGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGAC 107253 |||| || | ||||| |||| || |||| ||||| | | ||||||||| | | Sbjct 827733 GGGTCGGCGAAGCGTGTGTGAA-GTA-CTTGCTCGACATGTAATTGTATGTCTCAATTGC 827790 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 ||| |||||||| || || ||||||| || ||||||||| | ||||| ||| || Sbjct 827791 CTTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCATGTGTTGTGG 827847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980431262000