Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 >seq4 Length=3241893 Score = 120 bits (132), Expect = 3e-22 Identities = 419/649 (65%), Gaps = 14/649 (2%) Strand=Plus/Plus Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 ||| |||| || ||| || ||||| ||||| || | ||| ||||||||||| || || Sbjct 827230 AGTGTATAGCTCCTCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGG 827289 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 ||||| | || ||| || | | | | || | |||| || | || || ||||| Sbjct 827290 GCACATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCA 827349 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 | || |||||| || | || | | |||||| |||||| |||| | || || Sbjct 827350 CAACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTC 827409 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 ||| ||| | | | || || |||||||| || | || || || | ||||||| || Sbjct 827410 AAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCG 827469 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 ||| || || |||||||| | ||| || || |||||||| || || | | ||| |||| Sbjct 827470 TTTGTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGAT 827529 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 | ||| || || | ||||| ||||| ||| || || |||| | || | Sbjct 827530 GAGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAAT----CC 827585 Query 48473 AATTGAAAT----ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 | || || ||| ||||| ||||| |||| || || | || ||| || || | Sbjct 827586 GGTGGACATTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCACGTCTTCAGTG 827645 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 | ||||| || || || || || || || |||||| | || || || ||||||| Sbjct 827646 TGTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTT 827705 Query 48589 GCG--GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA-TTTCT 48645 | | |||| || || | ||| || | || || || || || | || | || || Sbjct 827706 GGGGCGATG--GGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCT 827763 Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAG 48705 | || | | || ||||| ||||| | ||| || || |||||| || | | Sbjct 827764 C-GACATGTAATTGTATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGG 827822 Query 48706 ATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 | |||||||| | ||| | ||| || | || ||||||||| ||||| Sbjct 827823 ACACACGCATCAGCATGTGTTGTGGACGCTCGGCAATTTTGTCGTTTAT 827871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108448682000