Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 >seq3 Length=4703234 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | || || || ||||| || || || || || ||||| |||| | Sbjct 3808504 CCACCGCGTAGACGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3808445 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | | || || | ||||| || || || || | |||||||||||| || ||| Sbjct 3808444 AGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGA 3808385 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || ||||| || || ||| | || | || || || | ||| || Sbjct 3808384 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACC 3808325 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||| |||||||| || || || || || |||||||| Sbjct 3808324 TCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808278 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || || ||||| |||| | || | | |||| || | ||| Sbjct 3808252 TGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCGAGCTGC 3808193 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||||||||| || || ||||| || || || || || || Sbjct 3808192 TTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 3808133 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || || | |||||| || || |||| ||| |||||||| Sbjct 3808132 GACTTCACGTTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTCTTGCCGGTC 3808073 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 3808072 AAGGTCTTGACGAAGATCTGCATG 3808049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| ||| | || | | |||| || Sbjct 3808714 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGGCCATCCTCA 3808655 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||||||||| || || ||||| || || || || Sbjct 3808654 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCCTGG 3808595 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||| || || | ||| || ||||| || | || ||| Sbjct 3808594 ATCTTCGACTTGACGTTGTCGATAGTATCGGATGATTCAACCTCAAGCGTAATGGTCTTG 3808535 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || || ||||| Sbjct 3808534 CCGGTAAGCGTCTTGACGAAAATTTGCAT 3808506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278158517850