Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 159 6e-34 seq1 150 3e-31 >seq4 Length=3241893 Score = 159 bits (176), Expect = 6e-34 Identities = 622/960 (65%), Gaps = 41/960 (4%) Strand=Plus/Plus Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCT 212756 || || |||||| |||||| ||||| | | | | || || ||||| | | ||||| | Sbjct 826168 TTGAGAGACTGAGACTGGTCGATGAAGGCGCCACGATCTGCAGCCATCTGCAGGATATGT 826227 Query 212757 CTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGG 212816 ||||| |||| |||||||| |||||| ||| | |||||| || || |||| | |||| Sbjct 826228 CTCTGTGAGATTTCCCACACAGTCTTGTAGAGTGCTTTGATATCATCGGGGATGTTGGGG 826287 Query 212817 ATGTTCTGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873 || ||| | ||| || ||| | ||| || | | ||||| ||| ||| Sbjct 826288 ATCCGCTGAATAGAGCCACCTTCGGCGATGATCCTATTCTT---CATGTTGTCGGACCAC 826344 Query 212874 AGGCCCCTGGTCTCCAGGCACTT-GACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 | |||| || || || | ||| || || || ||||| |||||||| || || | Sbjct 826345 AAGCCCATG-TCGACAAGATCTTTGAGCAACCAGGGATTGACGATCTGGAACTCGCCAGC 826403 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||| || | | ||| | ||| || || || ||||| | || |||||||| || || Sbjct 826404 GAGAACACGGCGGGAGTAGATGTTGGAGGTATAAGGCTCAAAGCATTCGTTGTTACCGAG 826463 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 |||||| | || ||| || ||||| |||||||| || || ||| | | || || Sbjct 826464 AATCTGAGATGTAGAGGCAGTCGGCATAGGAGCCACGAGAAGGGAGTTGCGGAGGCCATG 826523 Query 213053 CTCGCCGATGAG-GCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCT 213111 | | | || || || | | |||||||||| ||| || Sbjct 826524 TTGGGCAATCTCAGCTTTGA-GAGCATCCCAGTCCCAAAGATCAGTGGGGG--------- 826573 Query 213112 TCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 | || |||||||||||| | || | ||||||| | ||| ||| | || || Sbjct 826574 TGACATTCCACATGTCATATTGAAGAATGCCTTGCGAGGCAGGGGAGCCTTCATAGGATT 826633 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGG 213231 ||||| ||| | || ||||| |||| ||| || || |||||||| | ||| |||| Sbjct 826634 CATAGGGTCCAAGTTCTTTGGCAAGCTTGCATGATGCGGTGAGGGCAGCATGGTATATGG 826693 Query 213232 TTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGC-ATCATCATG 213290 ||||||| || | |||| |||||| | ||||| || ||| ||| ||| ||| | Sbjct 826694 TTTCAAAGATTTGGATGTTAAGCTTCCTAGCCTCAGGAGACTCGAAAGGCAATCGGAGGG 826753 Query 213291 CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 || |||| || || || || || || || |||| ||| ||||| |||||| | | ||| Sbjct 826754 CG-AGGAAGACGTCGGCAAGACCTTGAACGCCGAGGCCAATGGGCCTGTGTTTGAAGTTG 826812 Query 213351 GACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGG 213410 ||| | ||| | |||||| ||| || |||||||||||||| ||| Sbjct 826813 CTGTTGCGGGCTTCCGGAACCGGGTAATGATTGACATCAATGATCTTGTTGAGATTGACA 826872 Query 213411 GTGGCCACTTTGGTGA----CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTC 213466 || | | | || | |||| ||| | || | | | || || || | Sbjct 826873 GT-GACGGTCTGAACAACCTCATG---CAGTTTCTGGAAGTCGTACTCG--GCATGAGGA 826926 Query 213467 CTG--CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GA 213521 || |||| || ||||| || | || || ||||| || || ||||||| || Sbjct 826927 ATGTCCACATACATGGGCAGAGCTAAAGATGCGAGATTGCACACTGCGACCTCCTCAGGA 826986 Query 213522 GAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTC 213581 ||| ||||||| |||||||| ||||| |||||| || ||||| || ||||| ||| Sbjct 826987 GAG---GTGTACTGGATGATCTCTGTGCAAAGGTTGGAGCTGCGGATCGTTCCCAGATTC 827043 Query 213582 TGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 | ||| ||| ||||| ||| || ||| ||||| |||||||| ||| || ||||| Sbjct 827044 TTCTGG-TTGCTCTTGCGATTGCAAGCATCTTTGTACAGCATGTATGGGTTTCCAGTCTC 827102 >seq1 Length=5232100 Score = 150 bits (166), Expect = 3e-31 Identities = 343/516 (66%), Gaps = 9/516 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || |||| ||||||||||| Sbjct 3073038 CTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAAGGAGATGTTCTC 3073097 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||||| | ||| || ||| | ||| | ||||| Sbjct 3073098 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTGGGATTGCCGAGAGACAATAGCAG 3073157 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||||||||||| |||| || |||||| || | || | Sbjct 3073158 GCGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGAGTTCATACCGAGCAGCGC 3073217 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||| |||| ||||| ||||| | ||| |||| || || || | || || Sbjct 3073218 GCAAGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGACCGCCTCGGTGATGATGTG 3073277 Query 48079 CTTAACGCGGGACTC---TGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || || || || | || ||||| | ||| | |||| | |||||| Sbjct 3073278 CTCGACCTCCTTCTTGCTTGGGCGTGTGTTGAGAAGG------GAGAAGAGGAGGCAGGC 3073331 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| |||||| ||| || || || |||||| | || |||||| || || || Sbjct 3073332 GAAGTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGGG 3073391 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || | |||||| || ||| |||||| || || Sbjct 3073392 CATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAAATACC 3073451 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || || || || || | | |||| | | | ||||||| || ||||| Sbjct 3073452 CTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGATATCCA 3073511 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | ||||| || |||||||| |||||| || Sbjct 3073512 TTTCATTGCCCACTCGGCCTTCTTGCGGATGCAGGG 3073547 Score = 84.2 bits (92), Expect = 4e-11 Identities = 172/255 (67%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||| |||| ||||| | ||||| || ||||||||| || |||||| | ||||| Sbjct 3073673 GTACGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCATCGCGCCTC 3073732 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | || || || | || | ||| | ||||||||| ||||| || || || || Sbjct 3073733 TGGTATTTGTACCTCGCCGCTAAAGCGCTCGACCAGATTCTCGTTGACGATGCCGTCGGA 3073792 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || |||||||| ||||| ||| || ||| |||||| | || |||| || Sbjct 3073793 TGCGGCGAAGAAGGCGAGGACGTGTGAAATGAAGAAGCGCTCATCGTCATTGAGCCTCTT 3073852 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | || | ||||||| || || | ||||| | ||||||||||| || Sbjct 3073853 GTTCCAGTCGTGAAGGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAGAAGGAAGCTTC 3073912 Query 48661 TGCTTTTTTGTACAT 48675 || || |||||||| Sbjct 3073913 GGCCTTCTTGTACAT 3073927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532217792000