Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 156 8e-33 seq4 118 2e-21 >seq1 Length=5232100 Score = 156 bits (172), Expect = 8e-33 Identities = 346/519 (67%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| ||||| | |||||| |||||| ||||| ||||| | | | || |||| | || Sbjct 3073547 CCCTGCATCCGCAAGAAGGCCGAGTGGGCAATGAAATGGAT-ATCTGACAAGAGCTCCAC 3073489 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 || | ||| || ||||||||||| ||||| ||||| || || ||||| || || || Sbjct 3073488 CTTCGCGTCGCGTCTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTT 3073429 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| ||||||||||||||||| || || ||||||||| ||| ||| || || || Sbjct 3073428 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGA 3073369 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 |||||| | || ||||| | |||| || || |||||||| |||| | | Sbjct 3073368 ACTCATCTCTCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTC------ 3073315 Query 26049 CTTGCTC--CACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGA 26105 | | ||| |||| || |||| || ||| | ||||||| ||||| || | Sbjct 3073314 CCTTCTCAACACACGCCCAAGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAA 3073255 Query 26106 GATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAG 26165 ||||||| | ||||| | | || |||||| | Sbjct 3073254 GATCGAGCAAGAGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTATGAACTCTGG 3073195 Query 26166 ACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCG 26224 || ||| |||||||||| |||| || ||||||| ||||| || | || | || Sbjct 3073194 TCTGATGTGCCAATACATCGAGTTCGTCGCCGACCGCCTGCTATTGTCTCTCGGCAATC- 3073136 Query 26225 CCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 ||| | |||| |||| | ||||| |||||||| ||||| ||||| || |||| || Sbjct 3073135 CCAAGGTTTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCTTGGCCGG 3073078 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||||| || ||| | ||||| ||||| || Sbjct 3073077 CAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCA 3073039 >seq4 Length=3241893 Score = 118 bits (130), Expect = 2e-21 Identities = 308/464 (66%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || |||||||| ||||| ||||| |||||||| |||| || || | ||||| ||| Sbjct 826672 GTGAGGGCAGCATGGTATATGGTTTCAAAGATTTGGATGTTAAGCTTCCTAGCCTCAGGA 826731 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| |||| || || | ||||||||||| || || || || |||| || Sbjct 826732 GACTCGAAAGGCAATCGGAGGGCGAGGAAGACGTCGGCAAGACCTTGAACGCCGAGGCCA 826791 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 |||||||||||| | |||| | |||| ||||| || || || ||| ||||| | Sbjct 826792 ATGGGCCTGTGTTTGAAGTTGCTGTTGCGG--GCTTCCGGAACCGGGTAATGATTGACAT 826849 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 | || | |||||||| || | ||||| | | ||| ||||| ||| ||||| Sbjct 826850 CAATGATCTTGTTGAGATTGACAGTGACGGTCTGAACAACCTCATGCAGTTTCTG----- 826904 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC-AACGCTG 221713 ||| | ||||| | | ||| | |||||| | | || || || | | Sbjct 826905 -GAAGTCGTACTCGGC----ATGAGGAATG--TCCACATACATGGGCAGAGCTAAAGAT- 826956 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || || || ||||| || ||||| || ||| ||||| ||||||||||| || ||| Sbjct 826957 GCGAGATTGCACACTGCGACCTCCTCAGGAGAGGTGTACTGGATGATCTCTGTGCAAAGG 827016 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || ||| || ||||| | || || || |||||||||| ||| || ||| Sbjct 827017 TTGGAGCTGCGGATCGTTCCCAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTG 827076 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 || ||||| | || |||||||| |||||| | || || Sbjct 827077 TACAGCATGTATGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGAT 827120 Score = 109 bits (120), Expect = 1e-18 Identities = 325/500 (65%), Gaps = 6/500 (1%) Strand=Plus/Plus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || ||||| || |||| | ||| || | || | || |||||| |||||||| ||| Sbjct 827288 GGGCACATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATC 827347 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 |||| ||| | ||| | || | | || || || ||| | || |||| || Sbjct 827348 CACAACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGG 827407 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 || | || | |||| ||| |||||||| |||||||| |||| ||| | || || || Sbjct 827408 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGG 827467 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238 || |||||||| || ||||| || ||| | | |||| ||| ||||| | || Sbjct 827468 CGTTTGTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGG 827527 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGG 222295 | || ||||| || || || || || |||||| || ||| || | || || Sbjct 827528 ATGAGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGG 827587 Query 222296 TTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 | | || || || ||||| || ||| ||| |||||||||||||| |||| || Sbjct 827588 TG---GACATTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCACGTCTTCAGT 827644 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 ||||| ||||||||| || ||||||||| | | | || || || || ||||| Sbjct 827645 GTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATT 827704 Query 222416 TGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTA 222475 || | | || | || || || || || || |||||||| ||||| || Sbjct 827705 TGGGGCGATGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTC 827764 Query 222476 GACATCAGATCGTACGTCTC 222495 ||||| || ||| ||||| Sbjct 827765 GACATGTAATTGTATGTCTC 827784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844219472000