Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3 203 4e-47 seq5 93.3 6e-14 seq8 86.0 8e-12 >seq3 Length=4703234 Score = 203 bits (224), Expect = 4e-47 Identities = 484/722 (67%), Gaps = 15/722 (2%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || ||||| ||||||| || || ||||| || || ||||| |||| ||| ||| Sbjct 1807869 ACCGTCCCTGCCTACTTCAACGACAACCAGCGACAAGCCACCAAGGATGCTGGTGCCATT 1807928 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || ||| || | |||||||| || || || || || || || || |||||| Sbjct 1807929 GCTGGCCTCAACGTCCTCCGCATTATCAACGAGCCCACGGCCGCCGCTATCGCCTATGGT 1807988 Query 195839 CT-GGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGG 195894 || ||| | | ||| |||| | | ||||| | |||| || | |||||||| Sbjct 1807989 CTCGGATCCGGA-AAGTCCGAAAAGGAGCGGAATGTTCTCATCTACGACTTGGGTGGTGG 1808047 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 || || ||||| || || || | ||| | || ||| | ||| || ||||| || || Sbjct 1808048 CACTTTCGATGTGTCCCTGCTGCACATTCAGGGAGGTGTCTTCACCGTGAAGGCCACCGC 1808107 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGA 196014 |||||| || || | |||||| ||||||||||| | ||| || ||| || | Sbjct 1808108 TGGTGACACCCACTTGGGTGGTCAAGATTTCGATACCAATCTGCTTGATCACTTCAAGAA 1808167 Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCT 196074 |||||| |||| ||||| ||| | || || || | | || || ||||| || Sbjct 1808168 GGAGTTCACCAAGAAGACGAAGAAGGATCTCTCAGGCGATGCCCGAGCCCTCCGTCGTCT 1808227 Query 196075 TAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGGTT 196132 |||| || || || ||||| || ||||| || || | ||| | ||||| | ||| Sbjct 1808228 CCGGACCGCTTGCGAGCGTGCTAAGCGAACGCTTTC--CAACGCTACGCAAACCACTGTT 1808285 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTA-TACAACTATTACCCGTGCACGTTT 196191 ||||| |||||| | || || || || ||| | | |||| || |||||||| ||||| Sbjct 1808286 GAGATCGATTCGCTCTTCGATGGTGAGGATTTCAACTCCAAC-ATCACCCGTGCTCGTTT 1808344 Query 196192 TGAAGAGTTAAACTCTGATTTGTTTA--GGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || || ||| | | || | || | | | | || ||||| || || | Sbjct 1808345 CGAGGACTTGAACGCCAAGGCTTTCAACGGCA--CTCTCCAGCCCGTTGAGCAGGTGTTG 1808402 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 || || || || ||| ||||||||||| || || ||||| || || || ||| Sbjct 1808403 AAGGATGCCAACATCTCAAAGGACAAGGTTGATGAGATCGTGCTTGTTGGTGGTTCTACC 1808462 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369 |||||||| | ||| ||| || | ||| || |||||| || | | | || Sbjct 1808463 CGTATTCCTAGGATACAAAAGCTCCTTAGCGACTGCTTCAACGGCAAGAAGCTCGAGAAG 1808522 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | |||||||| ||||| || ||||| ||||| || ||||| ||||||| ||||||||| Sbjct 1808523 AGCATCAACCCCGATGAGGCTGTTGCCTATGGCGCTGCCGTCCAGGCTGGTATTCTCTCG 1808582 Query 196430 GG 196431 || Sbjct 1808583 GG 1808584 Score = 154 bits (170), Expect = 2e-32 Identities = 255/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 ||||||| ||||| || | ||||| ||| |||||||||||| || || | | | Sbjct 447705 CTCCCGAGGAAATCTCCGCCATGGTTTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTACC 447646 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 | || | || || || | |||||||| || || || || ||||||| || | || | Sbjct 447645 TTGGAGAGACCGTCAAGAACGCAGTTGTTACCGTCCCCGCCTACTTCAACGACGCTCAGC 447586 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | || || |||||||| | | ||||| ||||| || ||| | | |||| | Sbjct 447585 GCGCCGCTACCAAGGACGCCGGAACCATTGCCGGTCTTAATGTTCTCCGCGTGGTCAACG 447526 Query 195810 AACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAG-GACGAAGA--TAAAA 195866 |||| || || || || | || || ||||| |||||| ||| | |||| || | Sbjct 447525 AACCCACCGCTGCCGCTCTGGCCTACGGTCTTGACAAG-ACAGGTGACGCCGAACGCCAG 447467 Query 195867 ATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAG 195926 || ||| | ||| |||||||| ||||| || || ||||| || | |||| | | |||| Sbjct 447466 AT-TATCG-TCTACGATCTCGGAGGTGGAACTTTCGATGTGTCGATCCTCACTCTCGAAG 447409 Query 195927 GTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCG 195986 | ||| | |||||||| ||||||| |||||||| |||||||| |||||||| ||||||| Sbjct 447408 GCGGTGTTTTCGAAGTTCAGGCTACCGCTGGTGACACTCATCTTGGTGGTGAGGATTTCG 447349 Query 195987 AT 195988 || Sbjct 447348 AT 447347 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||| | || || || || ||||| |||||||| || || || Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | || | ||||| || || ||||| ||||| || || ||||| Sbjct 3808110 GATACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAA 3808169 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || || ||||| || ||||| || ||||| || ||||| | || |||||| Sbjct 3808170 CAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAAC 3808229 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || ||||| || || | || || |||||| Sbjct 3808230 ATCCAGAAGGAGTCTACACTCCACCTCGTCCTTCGTCTCCGTGGTGGT 3808277 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || ||| | || || || || || || ||||||||||| | Sbjct 3808273 GTGGTATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAAT 3808332 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || || || || |||| | |||||||| || ||||| |||||||| || | Sbjct 3808333 CATCGGATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGG 3808392 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 |||| || || || || || || || || ||||| ||||| || || || ||| | || | Sbjct 3808393 ATCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACT 3808452 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||| || |||||| | || || | || || |||||| Sbjct 3808453 ACAACATCCAGAAGGAGTCCACCCTACACTTGGTGCTCCGTCTACGCGGTGGT 3808505 Score = 149 bits (164), Expect = 8e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||| || || || || || || || || || || |||||||| |||| Sbjct 3808729 GTGGTATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGT 3808788 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | ||||| ||||| ||| |||| | ||||| || || ||||| ||||| ||||| | Sbjct 3808789 CCAGCGACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGG 3808848 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || || || || || || ||||| ||||| || || || ||| | |||| Sbjct 3808849 ACCAGCAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATT 3808908 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 ||||| |||| ||||| || || || ||| | || || Sbjct 3808909 ACAACATTCAGAAGGAATCGACCCTGCACTTGGTGCT 3808945 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || |||||||||||||| ||||| || ||||||||||| || | || || Sbjct 3807846 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGTCC 3807905 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| ||||| || || || ||||| || | || || || || || Sbjct 3807906 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3807965 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| |||||||| || ||||| | || |||||| | || |||||||| ||||| ||| Sbjct 3807966 CAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTTCAC 3808025 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG 172088 || || || | || || ||||| Sbjct 3808026 CTCGTCCTTCGTCTCCGCGGTGG 3808048 >seq5 Length=3199122 Score = 93.3 bits (102), Expect = 6e-14 Identities = 160/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 || || || ||||| |||| |||| | || || ||||||||||| | || || Sbjct 2575983 ATTCCCCGCGGTGCCATTCTGTCCGGCCCACCCGGAACTGGTAAAACATTGCTTGCCAAA 2576042 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGGC---GAGTTTCATC 198665 |||| ||||| || ||| | |||||||| |||||| | | |||| |||||| | Sbjct 2576043 GCTACAGCGGGGGAGTCGGGAGTCCCCTT-CTTCAGCG-TGAGCGGTTCAGAGTTTGTT- 2576099 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 |||||||| || ||||| |||||| ||| || || || || || | | | || ||| || Sbjct 2576100 GAGATGTTTGTCGGTGTCGGTGCTTCGCGTGTACGAGATCTGTTCGCGAATGCGCGT-AA 2576158 Query 198726 AATCAA-CCATGTATCATCTTCATTGATGAGATTGACGCTGTTGG 198769 | || || || |||||||||||||| || || ||||| |||| Sbjct 2576159 GAGCACTCCCTGCATCATCTTCATTGACGAAATCGACGCCATTGG 2576203 >seq8 Length=2851179 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || ||||||||||||||||| ||||| || Sbjct 895016 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCG 895075 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCA 171953 ||||| ||||| || | || ||||||| || Sbjct 895076 GACACCATCGACAATGTGAAGTCCAAGATCCA 895107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861988836000