Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-30 seq14 127 2e-23 seq4 96.9 4e-14 seq8 95.1 1e-13 >seq1 Length=5232100 Score = 150 bits (166), Expect = 2e-30 Identities = 221/308 (72%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| || || |||||| |||||| |||||||||||||| | | ||||| |||||| Sbjct 3073041 GTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAAGGAGATGTTCTCCAT 3073100 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCAT--CCGAGCGACGCGAGCAGG 868816 | ||| ||||||| | ||||| ||| | || ||||| ||| |||||| Sbjct 3073101 GAAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTG--GGATTGCCGAGAGACAATAGCAGG 3073158 Query 868817 CGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCC 868876 ||||||||||| ||||||||||| |||||||| || || | |||||| |||| ||||| Sbjct 3073159 CGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGAGTTCATACCGAGCAGCGCG 3073218 Query 868877 ACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGC 868936 ||||| | |||| | | ||||||| |||||||| ||| |||||| |||||| ||| Sbjct 3073219 CAAGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGACCGCCTCGGTGATGATGTGC 3073278 Query 868937 CTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 868995 | | | || | |||| || || ||| | | | |||| |||||||| ||||| Sbjct 3073279 TCGACCTCCTTCTTGCTTGGGCGTG-TGTTGAGAAGGGAGAAGAGGAGGCAGGCGAAGTC 3073337 Query 868996 GCAGTGCA 869003 | ||||| Sbjct 3073338 GGTGTGCA 3073345 Score = 123 bits (136), Expect = 3e-22 Identities = 183/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || |||||||||||| || ||| | | |||||| | || Sbjct 3073681 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCATCGCGCCTCTGGTATTT 3073740 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| | || || || |||| |||||| |||||||||||| ||||||| Sbjct 3073741 GTACCTCGCCGCTAAAGCGCTCGACCAGATTCTCGTTGACGATGCCGTCGGATGCGGCGA 3073800 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC---ACCCAGT 869807 | || || |||||||| || ||| |||||| ||||| ||||| | ||||| Sbjct 3073801 AGAAGGCGAGGACGTGTGAAATGAAGAAGCGCTCATCGTCATTGAGCCTCTTGTTCCAGT 3073860 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | ||| | ||| || | ||| ||||||||||||| || || |||||||| | Sbjct 3073861 CGTGAAGGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAGAAGGAAGCTTCGGCCTTCT 3073920 Query 869868 TGTACATCTCCCATACTTG 869886 ||||||| | ||| || || Sbjct 3073921 TGTACATTTGCCAGACCTG 3073939 Score = 98.7 bits (108), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||||||||||||||| ||||| |||||| || || ||| || || |||| Sbjct 1412324 AGGACAGCATCGGCGGCACAGTGACATGCGTGATACGGAATTGCCCGAGCGGACTGGGCG 1412383 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 ||||||||||||| || | ||||| | ||||| || || ||||| || || |||| Sbjct 1412384 AGCCGTGCTTTGATAAACTAGAGGCGACCCTCGCGCATGCTATGCTTAGTATTCCTGCCA 1412443 Query 19165 CCAAGGGATTCGAGATTGG 19183 | ||||| || |||||||| Sbjct 1412444 CTAAGGGGTTTGAGATTGG 1412462 Score = 96.9 bits (106), Expect = 4e-14 Identities = 124/165 (75%), Gaps = 11/165 (7%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCC 869268 |||| |||||||||||||| ||||||||||||||||| ||||||| ||| ||| || Sbjct 3073378 AAGGTCAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGC-GAAGGATCC 3073436 Query 869269 CGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAG 869328 ||| || || |||||||| ||||||||| | | || ||| || |||||| ||| Sbjct 3073437 ACTGAAGAAAATACCCTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTG--GAG 3073494 Query 869329 GCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 || ||||| ||||| ||||| ||||| |||||||| || Sbjct 3073495 ---CT-CTTGTCAGATATCCATTTCATTGCCCACTCGGCCTTCTT 3073535 >seq14 Length=1000850 Score = 127 bits (140), Expect = 2e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||| | || |||||| | || |||||| | || |||||| Sbjct 372311 GCTGCCAACTACCTCGACATCAAGGCACTACTCGATGTCGGATGCAAGACGGTCGCCAAC 372370 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||| |||||||| ||||| || || ||| || ||| Sbjct 372371 ATGATCAAGGGCAAGTCCCCCGACGAGATCCGAAAGACGTTCAATATCCAGAACG 372425 >seq4 Length=3241893 Score = 96.9 bits (106), Expect = 4e-14 Identities = 185/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 1630081 GCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCC 1630140 || || | ||| |||| || ||||| || | ||| ||||| ||| ||| || || || Sbjct 827498 GCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTGTTCCA 827557 Query 1630141 GCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGAC 1630200 | | |||||| |||| || || | | ||| | | || || ||||| || | Sbjct 827558 CCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCAGACCAATACCGCCTGCGGTT 827617 Query 1630201 TTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTTC 1630260 |||||||| | |||||| || || ||||| |||||||||||||| ||| ||||| Sbjct 827618 TTGGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTC 827677 Query 1630261 ATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAGAGCGTG 1630320 || || | ||| ||||| || || |||| || | || || || |||||||| || Sbjct 827678 ATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGGGTCCCCGCATTGAAGAGGGTC 827737 Query 1630321 GGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 |||| || ||||| ||| | ||||||| Sbjct 827738 GGCGAAGCGTGTGTGAAGTACTTGCTCGACATG 827770 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||||| |||||||| | ||| || || || || || ||||| || ||||| || Sbjct 827346 TCCACAACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGA 827405 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||| || || ||| || |||||||||||| |||||||||||| |||||| || || Sbjct 827406 GGTCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTG 827465 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||| ||| |||||| Sbjct 827466 GGCGTTTGTTGCCGCC 827481 >seq8 Length=2851179 Score = 95.1 bits (104), Expect = 1e-13 Identities = 190/276 (69%), Gaps = 7/276 (3%) Strand=Plus/Minus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 ||||||| ||| | | || |||||||||||||| | ||| | || || || ||||| | Sbjct 1284791 CGATCTTTGAGTCCGGGTCACTGGCGCTCATCTTTC--CTCCCTGT-AGTCCAGGCACCA 1284735 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAA 1852163 ||||| | || || ||||| | || || | |||||| || ||| | Sbjct 1284734 TGGGGTTCATGAGATGTGCGCGCTCCTTGTATCCAATCTTAGGCAGGACTTCCTTCGCCA 1284675 Query 1852164 AGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCT 1852223 ||||| ||||| | |||||| ||||| ||||| | || || ||||||| ||||| Sbjct 1284674 GCGCAAAGATCTTCCTCTGGTCCACGCCGCCGAACTGCACATCCACATCGAGGTACTGCT 1284615 Query 1852224 CGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTT-GCGGTCCATC 1852282 |||| || |||||||| || ||||||| || ||||| ||| || | || | | Sbjct 1284614 CGTCCAGCGCCTGCATAAGTGGGTAGATCAGCCCGCTCAACGGCGCATTCTCCGT-CTGC 1284556 Query 1852283 TTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGC 1852316 ||||| |||| ||| |||||| || ||| ||||| Sbjct 1284555 TTGACGACCTCCGCGCCGGCCTTCTTCGCGTCGTGC 1284520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135096765850