Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 122 8e-23 seq3 116 3e-21 seq7 82.4 7e-11 >seq4 Length=3241893 Score = 122 bits (134), Expect = 8e-23 Identities = 409/624 (66%), Gaps = 27/624 (4%) Strand=Plus/Plus Query 139314 GTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACA 139373 ||| || || ||||| ||||| || |||| | ||| | |||| | || || || Sbjct 827233 GTATAGCTCCTCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCA 827292 Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 |||||| | ||| |||||||| ||| |||||| |||||||||| |||||||||||||| Sbjct 827293 CATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAA 827352 Query 139434 AGCGAACAGCAAATC----GCGCG-CCTTCTTATCTTCCGAACCCATGTTACGTTTC--A 139486 ||| | | || || ||||| ||||| |||| ||||| | | || | | Sbjct 827353 CGCGTAAAATAAGTCACGAGCGCGAACTTCT--TCTT----TGCCATGATTC-TTCCGGA 827405 Query 139487 TGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTT 139546 || |||||| | |||||||| ||||||||||| ||||| |||||||| | || ||| Sbjct 827406 GGTCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTG 827465 Query 139547 TCCGT---TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCG 139603 ||| ||||| |||||||| || | | | | ||| ||| | || || | ||| | Sbjct 827466 GGCGTTTGTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAG 827525 Query 139604 GCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGACTGTTGCGAGCTCGGAC 139661 | |||||| ||| || || || || | || ||| || | | ||| || | Sbjct 827526 GGATGAGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCC--CCGGTAGCACGAAT 827583 Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-- 139719 || ||||| | || || ||||| | |||||| || | |||| || | Sbjct 827584 CCGGTGGACATTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCA--CGTCTTC 827641 Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779 | ||| || || || || |||||||| |||| ||| || || ||||| || || Sbjct 827642 AGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAC 827701 Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTG 139838 | ||| || | || || || || || || || ||||| ||||| | ||| Sbjct 827702 ATTTGGGGCGATGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTG 827761 Query 139839 TTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGAC 139898 ||||||| | | ||| || || || || | | || || || || || ||||| Sbjct 827762 -CTCGACATGTAATTGTATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGAC 827820 Query 139899 AGAGACTCGCATCAGCATATGTTG 139922 || || ||||||||||| ||||| Sbjct 827821 GGACACACGCATCAGCATGTGTTG 827844 >seq3 Length=4703234 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || ||||||||||| || || ||| | Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3808794 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 3808853 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| || || ||| | || ||||| ||| Sbjct 3808854 CAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAAC 3808913 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || ||||||||| | || |||| || || Sbjct 3808914 ATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || ||||||||||| || ||| | | Sbjct 3808278 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAATCATCG 3808337 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || ||||| |||||| Sbjct 3808338 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGATCAA 3808397 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| || || ||| | || || || ||| Sbjct 3808398 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACTACAAC 3808457 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || |||||||||||| | || | ||||| || Sbjct 3808458 ATCCAGAAGGAGTCCACCCTACACTTGGTGCTCCGTCTACGCGGTGG 3808504 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || |||||||| || ||| | | Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || ||||| |||||| Sbjct 3808110 GATACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAA 3808169 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| |||||| | | | | || || || ||| Sbjct 3808170 CAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAAC 3808229 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || ||||| ||| Sbjct 3808230 ATCCAGAAGGAGTCTACACTCCAC 3808253 >seq7 Length=3010262 Score = 82.4 bits (90), Expect = 7e-11 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||||||||| || || ||||| ||||| ||| | ||||| || || || Sbjct 2377954 AAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAACAGCGTCTCATCTTCGCGGGCAAG 2377895 Query 24848 CAGCTGGAGGATTCGAGAAACATG-TCA--GATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| ||||| || | || | ||| ||||| ||||| || ||||| ||||| || Sbjct 2377894 CAGCTCGAGGA--CG-GCCGCACGCTCAGCGATTACAACATCCAGAAGGAGTCGACGCTG 2377838 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||| | || |||| || ||| Sbjct 2377837 CATCTGGTCCTTCGTCTGCGTGGCGGC 2377811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897318814000