Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 145 7e-30 seq4 140 3e-28 seq1 140 3e-28 seq7 109 5e-19 >seq3 Length=4703234 Score = 145 bits (160), Expect = 7e-30 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 || || | ||| || || ||||| || ||||||||| | || || || || |||| Sbjct 3808939 AAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGGCCG--TCTTCGA 3808882 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||||||| | ||||||||||||||||| || |||||||| |||||||| || Sbjct 3808881 GCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGA 3808822 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | |||||| ||| ||| || |||| || | ||| |||| Sbjct 3808821 TCTTCGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACCTCGAGCGTAATGGTCTTGC 3808762 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||| || ||||| || ||||| Sbjct 3808761 CGGTCAGAGTCTTGACGAAGATTTGCAT 3808734 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | ||||||||||||||||| Sbjct 3808246 GTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 3808188 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||| || || ||||||||||| |||||||| |||||| ||| Sbjct 3808187 AGCGAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT 3808128 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | | ||||| |||| |||| || |||||||||| || Sbjct 3808127 CACGTTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTCTTGCCGGTCAAGGT 3808068 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3808067 CTTGACGAAGATCTGCATG 3808049 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 || |||| ||||||||| ||||| || ||||| ||| | || || || || |||| Sbjct 3808483 AAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCG--TCTTCGA 3808426 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||||||| | ||||| ||||| || || ||||| ||||| |||||||| | Sbjct 3808425 GCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGAA 3808366 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | |||| || || | | || || |||| || | || |||| Sbjct 3808365 TCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACCTCGAGCGTAATCGTCTTGC 3808306 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || ||||| |||||||| Sbjct 3808305 CGGTCAAGGTCTTGACGAAGATCTGCAT 3808278 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | || || ||||||||||| Sbjct 3808018 GTCGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 3807960 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 3807959 GGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 3807900 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | | || | ||||| | || |||||| |||| ||||| ||| |||||||| Sbjct 3807899 CACATTGTCGATTGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 3807846 >seq4 Length=3241893 Score = 140 bits (154), Expect = 3e-28 Identities = 474/731 (65%), Gaps = 13/731 (2%) Strand=Plus/Plus Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCG 149112 |||| || ||| ||||||| | || || || || | ||||| || || | || || Sbjct 827229 AAGTGTATAGCTCCTCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCG 827288 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCC 149172 |||||||||| | |||| |||||| | | | |||||||||||| ||||| || || | || Sbjct 827289 GGCACATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCC 827348 Query 149173 AGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGC-GCAGG 149231 | | |||||| | | ||| || || ||||| ||| ||| | | | | ||| Sbjct 827349 ACAACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCC-ATGATTCTTCCGGAGG 827407 Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291 | || | || ||| | ||| |||||||| ||||| | ||| | || | ||| || | Sbjct 827408 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGG 827467 Query 149292 CGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 || ||| ||||| || || || | | | | ||||| | || |||| |||||| Sbjct 827468 CGTTTGTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGG 827527 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTG 149408 | || | | ||||| || || | |||| ||| || || | | Sbjct 827528 ATGAGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGG 827587 Query 149409 TGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGT 149467 || || || | || || ||||| || || ||||| ||||| ||| | || || Sbjct 827588 TGGACATTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCACGTCTTC-AGTGT 827646 Query 149468 CGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTG 149527 |||||||||||||||||||| |||||| | || ||||| ||| ||||||| Sbjct 827647 GTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTG 827706 Query 149528 CGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCT 149587 || | | || || || ||| | ||| || |||||||| || || || ||| Sbjct 827707 GGGCGATGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTT---GCT 827763 Query 149588 CATCATCTC---GTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGC 149644 | ||| | ||| | ||| | | || ||||| |||||||| ||||| | || Sbjct 827764 CGACATGTAATTGTATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGGA 827823 Query 149645 GACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTA 149704 || ||||||||||| || || || ||||| || | ||||| || ||| | ||| Sbjct 827824 CACACGCATCAGCATGTGTTGTGGACGCTCGGCAATTTTGTCGTTTATGCGGAGGAGGTA 827883 Query 149705 GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAAT 149764 | ||| || |||||| | || ||| ||| ||||| |||||||| ||| | | || Sbjct 827884 TGAGCGTTCAAGAGTCTTGAAACCGAAGAACTGGTAGTTGAAGTCGCGATCGTAGACGAT 827943 Query 149765 GGCGGCGTCGA 149775 |||| || || Sbjct 827944 AGCGGAGTTGA 827954 Score = 114 bits (126), Expect = 1e-20 Identities = 589/931 (63%), Gaps = 34/931 (4%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA---GTCGCTTT 148109 ||||| |||||| ||||| |||||||| || || ||||| | | || ||| || | Sbjct 826174 GACTGAGACTGGTCGATGAAGGCGCCACGATCTGCAGCCATCTGCAGGATATGTCTCTGT 826233 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 || ||||| | |||||||| || ||||||| |||||| ||| | ||| Sbjct 826234 GAG---ATTTCCCACACAGTCTTGTAGAGTGCTTTGATATCATCGGGGATGTTGGGGATC 826290 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||||| | ||||| | | || | ||| ||| ||| | ||| | | | | Sbjct 826291 CGCTGAATAGAGCCACCTTCGGCGATGATCCTATTCTTCATGTTGTCGGACCACAAGCCC 826350 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | |||| || || | || || | |||| || | ||| |||||||| ||||| || Sbjct 826351 ATGTCGACAAGATCTTTGAGCAACCAGGGATTGACGATCTGGAACTCGCCAGCGAGAACA 826410 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || || || | |||| ||| | || ||||| | |||||||| || | |||||| Sbjct 826411 CGGCGGGAGTAGATGTTGGAGGTATAAGGCTCAAAGCATTCGTTGTTACCGAGAATCTGA 826470 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | || | || || ||||| || || || || |||||||| | || | || Sbjct 826471 GATGTAGAGGCAGTCGGCATAGGAGCCACGAGAAGGGAGTTGCGGAGGCCATG-TTGGGC 826529 Query 148410 ATTTTGCGCTTC-AGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 | | | |||| ||||| |||||||||| || | || || || ||||||||||| Sbjct 826530 AATCTCAGCTTTGAGAGCATCCCAGTCCCAAAGATCAGTGGGGGTGACATTCCACATGTC 826589 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 || || |||||||| | || ||| ||| || || || || ||||| | | Sbjct 826590 ATATTGAAGAATGCCTTGCGAGGCAGGGGAGCCTTCATAGGATTCATAGGGTCCAAGTTC 826649 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 || || | ||| || ||| || | | ||| || || || ||||| | Sbjct 826650 TTTGGCAAGCTTGCATGATGCGGTGAGGGCAGCATGGTATATGGTTTCAAAGATTTGGAT 826709 Query 148589 GTTGAGCAGCGCCGCC----GACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 ||| ||| | ||| || | ||| | |||| || || | || ||| Sbjct 826710 GTTAAGCTTCCTAGCCTCAGGAGAC----TCGAAAGGCAATCGGAGGGCGAGGAAGACGT 826765 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 ||||||| || || ||||| | ||||||||||| |||||| | |||| | ||| || Sbjct 826766 CGGCAAGACCTTGAACGCCGAGGCCAATGGGCCTGTGTTTGAAGTTGCTGTTGCGGGCTT 826825 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-T 148763 | | ||| || || ||| || |||||||||| |||||| || || | | Sbjct 826826 CCGGAACCGGGTAATGATTGACATCAATGATCTTGTTGAGATTG---ACAGTGACGGTCT 826882 Query 148764 GTAATTCTGC--GCAGCAATTCAAAATCGTACTTGTCAT---------CTACGATGCATC 148812 | | | | |||| | || ||||||| | ||| | || || ||| Sbjct 826883 GAACAACCTCATGCAGTTTCTGGAAGTCGTACTCGGCATGAGGAATGTCCAC-ATACATG 826941 Query 148813 GGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTA 148872 || || || | ||| || ||||||||||| || ||| || || | | |||||| | Sbjct 826942 GG--CAGAGCTAAAGATGCGAGATTGCACACTGCGACCTCCTCAGGAGAGGTGTACTGGA 826999 Query 148873 CGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGC 148932 |||||| | ||| || ||| || |||| |||| ||||| || |||||||||| Sbjct 827000 TGATCTCTGTGCAAAGGTTGGAGCTGCGGATCGTTCCCAGATTCTTCTGGTTGCTCTTGC 827059 Query 148933 TGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| || || |||||||||||||| || Sbjct 827060 GATTGCAAGCATCTTTGTACAGCATGTATGG 827090 >seq1 Length=5232100 Score = 140 bits (154), Expect = 3e-28 Identities = 345/517 (67%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| ||||| || ||||| || ||||| ||| || ||||| | Sbjct 3073038 CTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAAGGAGATGTTCTC 3073097 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | ||||| | || || | ||| | | ||||| Sbjct 3073098 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTGGGATTGCCGAGAGACAATAGCAG 3073157 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||| | |||||| ||| | |||||| || |||| || Sbjct 3073158 GCGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCA-GAGTTCATACCGAGCAGCG 3073216 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 | |||| ||| |||| ||||| | ||| || | |||||||| ||| ||| Sbjct 3073217 CGCAAGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGACCGCCTCGGTGATGATGT 3073276 Query 120590 ---CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 ||| | | | || || | |||||| || | | | || ||||| | Sbjct 3073277 GCTCGACCTCCTTCTTGCTTGGG--CGTGTGTT-GAGAAGGGA---GAAGAGGAGGCAGG 3073330 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 | ||||| ||||||| |||||| || || || || || || || || |||||||||| Sbjct 3073331 CGAAGTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGG 3073390 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| || | |||||| |||| |||| || ||| || ||||| | | Sbjct 3073391 GCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAAATAC 3073450 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 |||| || ||||||||| || | ||| || || || | ||||| |||| Sbjct 3073451 CCTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGATATCC 3073510 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | ||||| |||||||||||||| ||||| | ||| || Sbjct 3073511 ATTTCATTGCCCACTCGGCCTTCTTGCGGATGCAGGG 3073547 >seq7 Length=3010262 Score = 109 bits (120), Expect = 5e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||||| | |||| ||||||||||||||||||| Sbjct 2377842 GTCGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCC 2377901 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | ||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct 2377902 GCGAAGATGAGACGCTGTTGGTCGGGGGGGATGCCTTCTTTGTCCTGGATCTT 2377954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420497862000