Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 9e-16 seq4 96.9 3e-15 >seq3 Length=4703234 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | ||||||| || || |||||||||||||||| ||||| ||| || Sbjct 3808714 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGGCCATCCTCA 3808655 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| |||||||||||||| || || ||||| || || || Sbjct 3808654 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCCTGG 3808595 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | |||||||| | || || || | ||| | || || Sbjct 3808594 ATCTTCGACTTGACGTTGTCGATAGTATCGGATGATTCAACCTCAAGCGTAATGGTCTTG 3808535 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | |||||| ||||| Sbjct 3808534 CCGGTAAGCGTCTTGACGAAAATTTGCAT 3808506 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | | ||||| || || |||||||||||| | || || |||||| Sbjct 3808486 ACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCG 3808427 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| |||||||||||||| ||||| ||||| || || || | Sbjct 3808426 AGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGA 3808367 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||||| | | || || |||| ||| | ||| || Sbjct 3808366 ATCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACCTCGAGCGTAATCGTCTTG 3808307 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | ||| |||||||| Sbjct 3808306 CCGGTCAAGGTCTTGACGAAGATCTGCAT 3808278 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || ||| |||||||| || || | Sbjct 3808243 GACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 3808184 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||||||||| ||||| ||||| || || || || || |||| Sbjct 3808183 AAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACG 3808124 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||||| |||| ||| | ||| || || |||| || || Sbjct 3808123 TTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTG 3808064 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 3808063 ACGAAGATCTGCATG 3808049 >seq4 Length=3241893 Score = 96.9 bits (106), Expect = 3e-15 Identities = 459/717 (64%), Gaps = 27/717 (4%) Strand=Plus/Plus Query 147705 CTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGA 147764 ||| ||||| || || || || || || || ||||| | | ||| ||||| || | Sbjct 827242 CTCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGT 827301 Query 147765 CCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACA- 147823 |||| | ||| | | | ||||| ||| ||||| ||||| | ||||| |||||| | Sbjct 827302 CCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAA 827361 Query 147824 TAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGTTTCAAA--TTAAGCACG 147879 |||| || || || || | | || | ||||| | | || | | | ||| | | Sbjct 827362 TAAG-TCACGAGC---GCGAACTTCTTCTTTGCCATGATTC-TTCCGGAGGTCAAGGAAG 827416 Query 147880 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT--- 147936 | | | |||||||||||| || || | ||||| ||| | ||||||| || || Sbjct 827417 CCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTG 827476 Query 147937 CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCG 147996 ||||| || || |||| | | | ||||| | || || | ||| || || ||| Sbjct 827477 CCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCG 827536 Query 147997 CTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGG--GCTCGCACTTCGTGCACGT 148054 ||| ||||| || || | || | | ||| ||| || || | ||| || | Sbjct 827537 TTCGACGTGCCATTTGTTCCACCAATGTAG--GCCCCGGTAGCACGAATCCGGTGGACAT 827594 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTA 148112 | | ||||| ||||| || || || || ||||| || | || ||| || Sbjct 827595 TCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCA--CGTCTTCAGTGTGTCATA 827652 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 |||||| ||||||||||| | || | | | | || || || ||||||| || Sbjct 827653 GATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGA 827712 Query 148173 CCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCAT 148232 | || ||||| ||| ||||| || ||||| || || | || ||| ||| Sbjct 827713 TGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTT---GCTCGACAT 827769 Query 148233 GCGA---TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCG 148289 | | || |||||||| || | |||||||| ||||| || ||||| | | || || Sbjct 827770 GTAATTGTATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGGACACACG 827829 Query 148290 CATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATT 148349 ||| |||||||| ||||| || ||||||| || | ||| || ||| || ||| Sbjct 827830 CATCAGCATGTGTTGTGGACGCTCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCG 827889 Query 148350 TTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||| || || ||| |||| ||| ||| ||| | || || | ||||| |||| || Sbjct 827890 TTCAAGAGTCTTGAAACCGAAGAACTGGTAGTTGAAGTCGCGATCGTAGACGATAGC 827946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610902118000