Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 159 5e-33 seq4 95.1 2e-13 seq21 86.0 9e-11 >seq1 Length=5232100 Score = 159 bits (176), Expect = 5e-33 Identities = 210/288 (73%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || |||||||| || ||||| ||||||||||| ||| |||| ||| Sbjct 3073933 TGGCAAATGTAC-AAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTC 3073875 Query 1455839 CGCCGACACGGTCCACTGGGT---GTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | ||| | ||||| | ||| | ||||| |||||| ||||| || Sbjct 3073874 CAAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGCTTCTTCATTTCACA 3073815 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| || |||||| ||| |||||||| |||||| |||| || |||| Sbjct 3073814 CGTCCTCGCCTTCTT-CGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCT 3073756 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 ||| ||||| ||| | |||||||| || | || || || ||||||||| || | Sbjct 3073755 TTAGCGGCGAGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATGG 3073696 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 | ||||||||||| || || |||||||| |||||||||| ||| ||| Sbjct 3073695 AGAACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATACATCA 3073648 Score = 109 bits (120), Expect = 8e-18 Identities = 187/266 (70%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 |||| |||||| |||||| ||| |||||||| ||||||| ||| |||| | ||||| Sbjct 3073279 AGCACATCATCACCGAGGCGGTCAAGATCGAGCAAGAGTTCCTCACCGAGGCACTGCCTT 3073220 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 ||||| |||| |||||| | || |||||||| ||||| || || |||||||| Sbjct 3073219 GCGCGCTGCTCGGTATGAACTCTGGT-CTGATGTGCCAATACATCGAGTTC-GTCGCCGA 3073162 Query 1456638 CCGCCTGCTCGCGGCGCTCGGC--TGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCC 1456695 ||||||||| | | |||||| | | ||| ||| | ||||||| ||| Sbjct 3073161 CCGCCTGCTATTGTCTCTCGGCAATCC---CAAGGTTTACAACGCCACCAACCCCTTCGA 3073105 Query 1456696 ATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGA 1456754 | |||||| ||||| | | |||||||||||||| |||||| ||||| || || Sbjct 3073104 CTTCATGGAGAACATCTCCTTGGCCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGA 3073045 Query 1456755 GTACGCCAAGGCCGGCGTCACCGCCA 1456780 ||| ||| | ||||||| |||| Sbjct 3073044 CTACCAGAAGTCTGGCGTCATGGCCA 3073019 Score = 87.8 bits (96), Expect = 3e-11 Identities = 119/158 (75%), Gaps = 11/158 (7%) Strand=Plus/Minus Query 1456123 aaaaaGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||| ||||| ||||| ||||| ||||| || ||| || ||| || Sbjct 3073535 AAGAAGGCCGAGTGGGCAATGAAATGGATATCTGACAAG-AG---CTCCAC-CTTCGCGT 3073481 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CC 1456237 ||| || || | ||||||||| |||||||| || || ||| || ||| ||| || Sbjct 3073480 CGCGTCTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTC-GCGTCC 3073422 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||||||||||||||| ||||||||||| || Sbjct 3073421 ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCT 3073384 >seq4 Length=3241893 Score = 95.1 bits (104), Expect = 2e-13 Identities = 180/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCG- 259951 ||||||| |||| || ||||| || |||| || ||||| ||||| || || || Sbjct 827770 CATGTCG-AGCAAGTACTTCACACACGCTTCGCCGACCCTCTTCAATGCGGGGACCCCAT 827712 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 ||||| || | || || ||||| || | || ||||||| || |||||||||||| Sbjct 827711 CGCCC-CAAATGTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGCATCGAGGGCATC 827653 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 |||||||| || ||| |||||| | |||||||| | || ||||| || ||| | Sbjct 827652 TATGACACACTGAAGACGTGCGCCATGATCTCCAAAACCGCAGGCGGTATTGGTCTGAAT 827593 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||| | | || || | || |||||| | | || || || ||| ||| ||||| Sbjct 827592 GTCCACCGGATTCGTGCTACCGGGGCCTACATTGGTGGAACAAATGGCACGTCGAACGGT 827533 Query 260132 CTTGTGCCCATGCTTCGCGT 260151 || | || |||||||| || Sbjct 827532 CTCATCCCTATGCTTCGTGT 827513 >seq21 Length=491942 Score = 86.0 bits (94), Expect = 9e-11 Identities = 266/409 (65%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 332839 GCGACCGGCGATTTGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTG 332898 ||| | | ||| |||||||| || ||||| || |||| ||||| |||||||| || Sbjct 119212 GCGGCGGACGACCTGGGCGTCTGTAAGGCGGGCATAGCGGAGGATAGCACAACGCGATTG 119153 Query 332899 CAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGT 332958 || | |||||||| | | ||| ||||| || | ||||| || |||||| | Sbjct 119152 TAGAGGCTCGATGATCTTGTTCGATTGATTGCATGCGAATGCAAATCGGGTCGTAGCACT 119093 Query 332959 ATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTC 333018 | | ||||| ||| || | |||||||| || | ||| | || ||| || || Sbjct 119092 GTAAATCTCCATCGTCCTTCGCAACGCCTGTTGCGCACCGCTCGTCATGCTGTCCGCTTC 119033 Query 333019 GTCGAGGATGATGATCTTGTGGC-GCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGT 333077 || || |||| | ||| || | ||||| | || || ||| | ||| || | Sbjct 119032 ATCCAGAATGACAAGCTTCTGTCTGCCCG-GTGGTAGTGTGACCTTCTTCTGTGCAAAGC 118974 Query 333078 GTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCA 333137 ||||| || | ||||| || | |||||||| || || |||||||| ||||||| Sbjct 118973 CCTTGATTCGATTCCTAACGACATCTATACCGCGCTCATCGGAGGCGTTGAGCTCGAGCA 118914 Query 333138 CGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCT 333197 ||||||| | | || | |||| | ||||| ||||| ||| || |||| Sbjct 118913 CGGCCTCCTTGTATGCGTCGCCCAGCATCTGCCGCGCGAGGCAGAGAATGGAGGTCGTCT 118854 Query 333198 TGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTC 333246 | || | || ||| |||| | | || || |||||||||||||| Sbjct 118853 TTCCAATTCCAGGCATGCCCGAGATGATGACGTGCGGCATGTTGCCGTC 118805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177806377408100