Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 seq8 98.7 1e-15 seq4 95.1 1e-14 seq7 89.7 5e-13 >seq3 Length=4703234 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | |||||| ||||| ||||| || |||||||||||| | || | Sbjct 3808495 AGACGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGG 3808436 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || || | |||||| ||||| || || ||||| || Sbjct 3808435 CCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCC 3808376 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | || || || ||||| || ||||| ||| Sbjct 3808375 TTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACCTCGAGCGTA 3808316 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || ||||| || ||||| Sbjct 3808315 ATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808278 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || |||||||||||| Sbjct 3808048 CCACCGCGGAGACGAAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAT 3807989 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 3807988 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGCGGG 3807929 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | |||||| || || ||||| Sbjct 3807928 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATTGTGTCAGAGGACTCCACC 3807869 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || ||||| Sbjct 3807868 TCGAGGGTGATGGTCTTGCCGGT 3807846 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || ||| || | || || | ||| | ||| || || |||||||| ||||||||||| || Sbjct 3808964 CTGTCCGCCACGCAGACGGAGCACCAAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATC 3808905 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | | || | ||| |||||||| ||||| || || || | |||||||| || || Sbjct 3808904 GGAGAGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGG 3808845 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || ||||| || || || || || || ||||| ||| | |||||| || || Sbjct 3808844 TGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGCTGGACTC 3808785 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| || ||||| | ||| || ||||| |||||||| Sbjct 3808784 GACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3808734 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || |||||||||||| Sbjct 3808276 CCACCACGGAGACGAAGGACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAT 3808217 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| || || || | ||||| ||||| || || Sbjct 3808216 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGG 3808157 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | || || || |||||||| Sbjct 3808156 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGATGATTCCACC 3808097 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| || || || ||||| || ||||| Sbjct 3808096 TCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808050 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| | ||| || || || ||||| || ||||||||||||| ||||| | Sbjct 3808723 AGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGG 3808664 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || || || || | |||||| ||||| || || ||||| || Sbjct 3808663 CCA-TCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTC 3808605 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| ||| | || ||||| ||||| || || || || Sbjct 3808604 CTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCGGATGATTCAACCTCAAGCGT 3808545 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || ||||| | || || |||||||||||||| Sbjct 3808544 AATGGTCTTGCCGGTAAGCGTCTTGACGAAAATTTGCAT 3808506 >seq8 Length=2851179 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || | |||||||| || || || ||||| || |||||||||||| Sbjct 895293 TCCTCCACGCAGACGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 895234 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| | ||| || ||||| || || || || ||||| |||||||| || || || Sbjct 895233 AAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGG 895174 Query 134606 TATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||||| ||| Sbjct 895173 AATGCCCTCCTTGTCTTGAAGTTT 895150 >seq4 Length=3241893 Score = 95.1 bits (104), Expect = 1e-14 Identities = 452/711 (64%), Gaps = 12/711 (2%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| |||| ||||| ||| || || | || ||||||||||||||||| |||||| Sbjct 827123 GCCATCCTCGAGGCTCAAACCGAGACTGGAAACCCATACATGCTGTACAAAGATGCTTGC 827064 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || ||| ||||| || | || |||| || || | || ||| || ||| | || Sbjct 827063 AATCGCAAGAGCAACCAGAAGAATCTGGGAACGATCCGCAGCTCCAACCTTTGCACAGAG 827004 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTA 8412 || | ||||||| | | || || || || || || |||||||| || || | | | Sbjct 827003 ATCATCCAGTACACCTCTCCTGAGGAGGTCGCAGTGTGCAATCTCGCATCTTTAGCTCTG 826944 Query 8413 AACGCGTTCGTTGATCGACGCTCAAACACT-TACGACTTTGAACAATTGAAAAACGCCGT 8471 | || || || | |||| | |||||||| | || || | | | || Sbjct 826943 CCCATGTATGTGGACATTC-CTCATGCCGAGTACGACTTCCAGAAACTGCATGAGGTTGT 826885 Query 8472 GCAA---GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGA 8528 || || || || |||| | | ||||||||||||||| ||| || | Sbjct 826884 TCAGACCGTCACTGT---CAATCTCAACAAGATCATTGATGTCAATCATTACCCGGTTCC 826828 Query 8529 AGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGC 8588 ||||| ||| ||| | ||||| ||| ||||| | ||||| |||||||| || Sbjct 826827 GGAAGCCCGCAACAGCAACTTCAAACACAGGCCCATTGGCCTCGGCGTTCAAGGTCTTGC 826768 Query 8589 CGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACAT 8648 ||||| || | | || | || | ||| | || || | | ||| ||||| Sbjct 826767 CGACGTCTTCCTCGCCCTCCGATTGCCTTTCGAGTCTCCTGAGGCTAGGAAGCTTAACAT 826708 Query 8649 AAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGA 8708 |||| ||||| | || | | || | || || | |||||| ||| Sbjct 826707 CCAAATCTTTGAAACCATATACCATGCTGCCCTCACCGCATCATGCAAGCTTGCCAAAGA 826648 Query 8709 ATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768 | | || | || ||||| || | ||| ||||||| | || || | ||||| || Sbjct 826647 ACTTGGACCCTATGAATCCTATGAAGGCTCCCCTGCCTCGCAAGGCATTCTTCAATATGA 826588 Query 8769 CATGTGGAATGTCACGCCCAC--CTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATT 8826 ||||||||||||||| ||||| |||||| ||| | ||| | | | ||| | ||| Sbjct 826587 CATGTGGAATGTCACCCCCACTGATCTTTG-GGACTGGGA-TGCTCTCAAAGCTGAGATT 826530 Query 8827 GCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCT 8886 || ||| || | ||||| || || | |||||| ||||| || ||| | || || Sbjct 826529 GCCCAACATGGCCTCCGCAACTCCCTTCTCGTGGCTCCTATGCCGACTGCCTCTACATCT 826470 Query 8887 CAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || || | || |||||||||| ||||||||| | ||| |||| | ||| Sbjct 826469 CAGATTCTCGGTAACAACGAATGCTTTGAGCCTTATACCTCCAACATCTAC 826419 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 |||||||||||| |||| ||| | || ||||| || ||||||||||| || || | Sbjct 827844 CAACACATGCTGATGCGTGTGTCCGTCGGCATACATGGCGAAGACATCGATAAGGCAATT 827785 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||| || | || || ||||||||||| ||| | || Sbjct 827784 GAGACATACAATTACATGTCGAGCAAGTACTTCACACACGCTTCGCCGACCCTCTTCAAT 827725 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 ||||| || |||| ||| ||||||| || || | | ||| || |||||| Sbjct 827724 GCGGGGACCCCATCGCCCCAAATGTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGC 827665 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 ||||| ||||| || |||| ||| ||||||| || |||||| || ||||| Sbjct 827664 ATCGAGGGCATCTATGACACACTGAAGACGTGCGCCATGATCTCCAAAACCGCAGGCGGT 827605 Query 7804 ATAGGTCTGAACGT 7817 || |||||||| || Sbjct 827604 ATTGGTCTGAATGT 827591 >seq7 Length=3010262 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || ||||| || ||||| || |||||||| |||| | ||| | ||| ||| Sbjct 2377830 ACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCG 2377889 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | |||||| || ||||| || ||||||||||| || || Sbjct 2377890 AGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGGGGGATGCCTTCTTTGTCCTGG 2377949 Query 134625 ATTTTTTGTTTGAC 134638 || || |||||| Sbjct 2377950 ATCTTGGATTTGAC 2377963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398084126000