Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq4 105 8e-18 >seq1 Length=5232100 Score = 131 bits (144), Expect = 2e-25 Identities = 338/503 (67%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | | | ||||| ||||| Sbjct 3073042 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAAGGAGATGTTCTCCATG 3073101 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGGG-TGGCACCCCAACTTGTTTGAGGAG 122486 ||||| || || || | ||||| ||| |||| | || || || || Sbjct 3073102 AAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTGGGATTGCCGAGAGACAAT----AGCAG 3073157 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 || || | || |||| ||||| | | ||||| ||||||||||||||| || Sbjct 3073158 GCGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGAGTTCATACCGAGCAGCGC 3073217 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || || ||||| || || |||| ||| ||| |||| |||||||| | | |||| Sbjct 3073218 GCAAGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGACCGCCTCGGTGATGATGTG 3073277 Query 122607 GTGGA--TAGTT-TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAA 122663 | || | || | | | | | || | || | | | || ||| || ||| || Sbjct 3073278 CTCGACCTCCTTCTTGCTTGGGCGTGTGTTGAGAAGGGAGAAGAGGAGG--CA-GGCGAA 3073334 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || ||| | |||||||| || || || |||||||| |||||| || || ||||| Sbjct 3073335 GTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGGGCAT 3073394 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCT 122782 |||||| |||||||| | ||| | || | ||| ||| || || |||||| ||||||| Sbjct 3073395 GAGACCGCGCTTCTTGAGCCAGAAGATGGACGC-GAAGGATCCACTGAAGAAAATACCCT 3073453 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| ||||| || | ||| || ||||||| | ||| ||| || | |||| Sbjct 3073454 CGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTG-GAGCTCTTGTCAGATATCCAT 3073512 Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864 ||||||||||| | |||||||| Sbjct 3073513 TTCATTGCCCACTCGGCCTTCTT 3073535 >seq4 Length=3241893 Score = 105 bits (116), Expect = 8e-18 Identities = 348/536 (65%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACAC 111613 |||| || ||||||||||| ||||| |||||||||| | |||| | || | | Sbjct 827315 TCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAGCG 827374 Query 111614 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 111673 ||| | ||||| | || || || || | |||||||| | | | || |||||| Sbjct 827375 CGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGTGC 827434 Query 111674 CATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATA 111729 |||||||| || |||| || | | || | || | ||| |||||| ||||| Sbjct 827435 CATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGC-CTTGATCAACATA 827493 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 | || || ||| | || |||||||| || || | ||| | || |||||||| Sbjct 827494 CCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTGT 827553 Query 111790 CCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGC 111849 || | ||| | | || | | |||| | || |||||||| || || Sbjct 827554 TCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCAGACCAATACCGCCTGC 827613 Query 111850 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 || ||||| || ||| | | || || ||||||| || | ||| |||||| Sbjct 827614 GGTTTTGGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCCTC 827673 Query 111910 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 ||| | |||| |||||||| |||||| || || ||| || || ||||||||||| Sbjct 827674 CTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGGGTCCCCGCATTGAAGAG 827733 Query 111970 GGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACA 112027 ||| || | ||||| |||| || |||| ||||| | | ||||||||| | | Sbjct 827734 GGTCGGCGAAGCGTGTGTGAA-GTA-CTTGCTCGACATGTAATTGTATGTCTCAATTGCC 827791 Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| |||||||| || || ||||||| | || ||||| | ||||| ||||| Sbjct 827792 TTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCATGTGTTGTGG 827847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031607480000