Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 116 5e-21 seq1 116 5e-21 >seq4 Length=3241893 Score = 116 bits (128), Expect = 5e-21 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 ||||| | ||| | ||| | || ||||| || ||||||||||| ||||| || ||| Sbjct 827288 GGGCACATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATC 827347 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 || | ||| | || | || ||| |||| ||||||| | || ||||| || | Sbjct 827348 CACAACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGG 827407 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---- 119176 || | ||| | | | || |||||||| || |||||||| | || | | || Sbjct 827408 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGG 827467 Query 119177 CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGG 119236 | | | | || | || | |||||||| || || ||| | ||||||||||| || Sbjct 827468 CGTTTGTTG-CCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGG 827526 Query 119237 AATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATC 119296 |||| ||| | || ||||||||| || | ||| | | | || | || ||| Sbjct 827527 GATGAGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCAC-GA-ATC 827584 Query 119297 --GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354 ||||| | || ||||||||| ||||| || ||||| |||||| | | || Sbjct 827585 CGGTGGACATTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCACGTCTTCAGT 827644 Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414 || | ||||| || ||||| ||| |||| | |||||||||||||| |||||| Sbjct 827645 GTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATT 827704 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG- 119473 || ||| || || || || |||||||| || || | ||||| |||| || |||| Sbjct 827705 TGGGGCGATGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAA-GTA-CTTGC 827762 Query 119474 -GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 119532 ||||| | | ||| ||||| | | |||||||| || || || |||| | Sbjct 827763 TCGACATGTAATTGTATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGG 827822 Query 119533 AGACCCGCATAAACATGTATTGGGG 119557 | || ||||| | ||||| ||| || Sbjct 827823 ACACACGCATCAGCATGTGTTGTGG 827847 Score = 111 bits (122), Expect = 2e-19 Identities = 322/495 (65%), Gaps = 8/495 (2%) Strand=Plus/Plus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||| | | ||| ||||||||||| ||||||||||| || ||||||| || | ||| Sbjct 826066 GCCATCGTTCGAAGGTAGTACATGCCCGTCTTGAGACCGAGCTTCCACCCAGCAAAGTGC 826125 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 || |||| | |||| | ||| || | |||| || || | | || || || Sbjct 826126 ATAGAGGTGATCTTGCCCATGGTAGGTTCCTTCATGTGGATATTGAGAGACTGAGACTGG 826185 Query 117948 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 118007 ||||||||| || ||||| || ||||| | | | || || |||||||||| Sbjct 826186 TCGATGAAGGCGCCACGATCTGCAGCCATCTGCAGGATATGTCTCTGTGAGATTTCCCAC 826245 Query 118008 ACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCA 118067 |||||| ||||||| || |||||||| ||||| | ||| || || || ||| Sbjct 826246 ACAGTCTTGTAGAGTGCTTTGATATCATCGGGGATGTTGGGGATCCGCTGAATAGAGCCA 826305 Query 118068 CCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCC 118127 || | || || || |||||| | | ||||| | || || | ||||| Sbjct 826306 CCTTCGGCGATGATCCTATTCTTCATGTTGTCGGACCACAAGCCCATGTCGACAAGATCT 826365 Query 118128 T----CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 118183 | | || || |||||| | ||||| || ||||| || | || Sbjct 826366 TTGAGCAACCAGGG----ATTGACGATCTGGAACTCGCCAGCGAGAACACGGCGGGAGTA 826421 Query 118184 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGC 118243 ||| |||| || || ||||||||||| || |||||||| | || || | ||| ||||| Sbjct 826422 GATGTTGGAGGTATAAGGCTCAAAGCATTCGTTGTTACCGAGAATCTGAGATGTAGAGGC 826481 Query 118244 TGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTT 118303 || ||||| || |||| ||||||| ||| ||||| || | || ||| | || Sbjct 826482 AGTCGGCATAGGAGCCACGAGAAGGGAGTTGCGGAGGCCATGTTGGGCAATCTCAGCTTT 826541 Query 118304 GAGAGCGTCCCAGTC 118318 |||||| |||||||| Sbjct 826542 GAGAGCATCCCAGTC 826556 >seq1 Length=5232100 Score = 116 bits (128), Expect = 5e-21 Identities = 328/498 (66%), Gaps = 8/498 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| ||| ||||| ||| |||||||| Sbjct 3073042 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAAGGAGATGTTCTCCATG 3073101 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | ||| ||| ||| | | || | || || || Sbjct 3073102 AAGTCGAAGGGGTTGGTGGCGTTGTAAACCT-TGGGATTGCCGAGAGACAATAGCAGGCG 3073160 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||| | ||||| | ||||||||||||| || || Sbjct 3073161 GTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGAGTTCATACCGAGCAGCGCGCA 3073220 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| | | ||| || | || || || | |||| | Sbjct 3073221 AGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGACCGCCTCGGTGATGATGTGCTC 3073280 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 | || | ||| || | | ||| | | | || ||| || ||| || || Sbjct 3073281 GACCTCCTTCTTGCTTGGGCGTGTGTTGAGAAGGGAGAAGAGGAGG--CA-GGCGAAGTC 3073337 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| | ||||| ||||| ||||||||||||||||||||| ||| || |||||||| Sbjct 3073338 GGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGGGCATGAG 3073397 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || || ||| |||||| || ||||| || Sbjct 3073398 ACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAAATACCCTCGAC 3073457 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | || || || | |||||| || |||| | | ||| | | ||| ||||| Sbjct 3073458 AGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGATATCCATTTCAT 3073517 Query 130204 CGCCCACTGCGCCTTTTT 130221 ||||||| ||||| || Sbjct 3073518 TGCCCACTCGGCCTTCTT 3073535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434813478000