Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 150 5e-31 seq2 93.3 1e-13 >seq3 Length=4703234 Score = 150 bits (166), Expect = 5e-31 Identities = 253/366 (69%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||||| || | |||||||| | || |||||||| | || || || || | Sbjct 447703 CCCGAGGAAATCTCCGCCATGGTTTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTACCTT 447644 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || || || | | || ||| |||| || || ||||| || || || || ||||| Sbjct 447643 GGAGAGACCGTCAAGAACGCAGTTGTTACCGTCCCCGCCTACTTCAACGACGCTCAGCGC 447584 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 | || || || || || || | |||||| || | |||||||| | || | || ||| Sbjct 447583 GCCGCTACCAAGGACGCCGGAACCATTGCCGGTCTTAATGTTCTCCGCGTGGTCAACGAA 447524 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| ||||| || | || || || ||||| || | ||||| ||| | ||| Sbjct 447523 CCCACCGCTGCCGCTCTGGCCTACGGTCTTGACAAGACAGGTGACGCCGAACGCCAGATT 447464 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | | | ||| | || ||||| ||||| ||||| || | || || || |||| || Sbjct 447463 ATCGTCTACGATCTCGGAGGTGGAACTTTCGATGTGTCGATCCTCACTCTCGAAGGCGGT 447404 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 |||| |||||| | || || |||||||| || ||||||||||| || ||||| ||| | Sbjct 447403 GTTTTCGAAGTTCAGGCTACCGCTGGTGACACTCATCTTGGTGGTGAGGATTTCGATCAG 447344 Query 349892 CGTCTC 349897 ||| || Sbjct 447343 CGTGTC 447338 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || |||||||| || || || || || || Sbjct 3808280 CATACCACCACGGAGACGAAGGACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 3808221 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| || || || || ||||| ||||| || || || ||||| || Sbjct 3808220 GGATAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGG 3808161 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | ||| |||| ||| Sbjct 3808160 AGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGATGATTC 3808101 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| | || || || || |||||||| Sbjct 3808100 CACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808050 >seq2 Length=5130782 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 140584 CTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTAT 140643 |||| || |||||||| ||| || || |||||||| || || || ||||||||||||| Sbjct 4781565 CTTCTAGCTGTTTTCCGAGAAATATGAGGCGTTGCTGGTCTGGGGGTATTCCTTCTTTAT 4781506 Query 140644 CCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTG 140703 |||| |||||| ||| | |||||| | | ||||| | || ||| | | ||||| Sbjct 4781505 CCTGGATTTTACTTTTGATATTATCGGTGGTGTCAGAGGACTCGCATTCGATTTCAACTG 4781446 Query 140704 TCTTTCCGGTTAGTGTTTT 140722 | || ||||| |||||||| Sbjct 4781445 TTTTACCGGTGAGTGTTTT 4781427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253429290150