Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 208 8e-49 >seq4 Length=3241893 Score = 208 bits (230), Expect = 8e-49 Identities = 419/614 (68%), Gaps = 28/614 (5%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCC----GCGAGTCCGCGAGACATA 19173 ||||| || | |||||||| |||||||| ||| || || | | |||||||| Sbjct 827832 ATGCGTGTGTCCGTCGGCATACATGGCGAAGACATCGATAAGGCAATT----GAGACATA 827777 Query 19174 CGA---CCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGG 19230 | | | || |||| |||| |||||| ||||| |||||||||| ||||| || || Sbjct 827776 CAATTACATGTCGAGC---AAGTACTTCACACACGCTTCGCCGACCCTCTTCAATGCGGG 827720 Query 19231 TACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTG 19289 || || | || || ||||| ||| ||||| | | ||||||||| |||||||| | Sbjct 827719 GACCC-CATCGCCCCAAATGTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGCATCG 827661 Query 19290 AGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCG 19349 |||||||||| || || || ||| |||||| |||||||| | || ||||| | Sbjct 827660 AGGGCATCTATGACACACTGAAGACGTGCGCCATGATCTCCAAAACCGCAGGCGGTATTG 827601 Query 19350 GGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAA------TGGGACGAACG 19403 | | | || || | |||| ||| ||| | | | ||| || || | Sbjct 827600 GTCTGAA-TG-TCCA----CCGGATTCGTGCTACCGGGGCCTACATTGGTGGAACAAATG 827547 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | | ||||| || |||| ||||| || |||| |||||| || || ||||| || Sbjct 827546 GCACGTCGAACGGTCTCATCCCTATGCTTCGTGTCTACAACAATACCGCTAGGTATGTTG 827487 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 | || || ||| ||||||| || |||| ||||||||||| |||||||||||||| | Sbjct 827486 ATCAAGGCGGCAACAAACGCCCAGGTGCGTTTGCCATCTACCTGGAGCCATGGCACGCCG 827427 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 |||| | | ||||| || || || ||| || || | || || | ||| ||| | Sbjct 827426 ACGTTTTCGGCTTCCTTGACCTCCGGAAGAATCATGGCAAAGAAGAAGTTCGCGCTCGTG 827367 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 || | || || ||||||||||||||||| |||||| || || || || ||| | Sbjct 827366 ACTTATTTTACGCGTTGTGGATTCCGGACCTGTTCATGAAGCGCGTGCAGGAGAACGGCG 827307 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| || ||||||||| ||||||| ||||| ||| | ||||| || || || | || Sbjct 827306 AGTGGACACTCATGTGCCCGAACGAATGTCCTGGTCTAGCGGACGTTTATGGTGATGAGT 827247 Query 19704 TCAATGAGTTGTAC 19717 || | ||| | ||| Sbjct 827246 TCGAGGAGCTATAC 827233 Score = 174 bits (192), Expect = 2e-38 Identities = 409/607 (67%), Gaps = 14/607 (2%) Strand=Plus/Plus Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 ||| | ||| | ||| | || ||||| || || | || || || || |||| |||||| Sbjct 827233 GTATAGCTCCTCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCA 827292 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||| || ||| || ||| || || || || |||||| |||||||| ||||||| Sbjct 827293 CATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAA 827352 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 || || | ||| || || | || || | ||| || ||| || || || || Sbjct 827353 CGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAG 827412 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 ||| | | | |||||||||||| |||||||| |||||||| |||| ||| ||| || Sbjct 827413 GAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTT 827472 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 | |||||| || | || |||| || || |||||| | || || ||||| || | || Sbjct 827473 GTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAG 827532 Query 79587 GCCG-TCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGA 79643 ||| ||| || ||| || || || || | ||| | || ||||| | | || Sbjct 827533 ACCGTTCGACG-TGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGA 827591 Query 79644 GCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTC 79703 || | | || || || || | |||||||| |||||| ||| || || || Sbjct 827592 -CA-TTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCACGTCTTCAGTGTGTC 827649 Query 79704 GTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG 79763 |||||||||||||| ||| ||||||||| ||| ||||||||| ||||| || || Sbjct 827650 ATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGG 827709 Query 79764 -GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT-- 79820 | || || || || |||||||||||||||| ||||| |||||| |||| ||| Sbjct 827710 CGATG-GGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTT---GCTCG 827765 Query 79821 -CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGA 79879 ||| || ||| ||||| | | || ||| ||||| || |||||||| | | Sbjct 827766 ACATGTAATTGTATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGGACA 827825 Query 79880 CGCGCAT 79886 | ||||| Sbjct 827826 CACGCAT 827832 Score = 158 bits (174), Expect = 1e-33 Identities = 487/743 (66%), Gaps = 33/743 (4%) Strand=Plus/Minus Query 20093 CACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTC 20152 ||| |||| || | ||||||| || || || |||||||| ||| | ||| | | Sbjct 826802 CACAGGCCCATTGGCCTCGGCGTTCAAGGTCTTGCCGACGTCTTCCTCGCCCTCCGATTG 826743 Query 20153 TCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCAC 20212 | ||||| ||| |||| | |||| |||| ||||| || || | ||||| Sbjct 826742 CCTTTCGAGTCTCCTGAGGCTAGGAAGCTTAACATCCAAATCTTTGAAACCATATACCAT 826683 Query 20213 GCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAG 20272 || |||||| | ||| ||| | || |||||||| || || || || | | | Sbjct 826682 GCTGCCCTCACCGCATCATGCAAGCTTGCCAAAGAACTTGGACCCTATGAATCCTATGAA 826623 Query 20273 GGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAG 20332 || || || || || | || || || || ||||||||| ||||| | ||| Sbjct 826622 GGCTCCCCTGCCTCGCAAGGCATTCTTCAATATGACATGTGGAATGTCACCCCCACTGAT 826563 Query 20333 TTTTGGAGC------GCCCTCAAGGTTGAGATCAAGACCCAC--GGGCTTCGCAACTCGT 20384 ||||| | || ||||| | |||||| | || || || || |||||||| Sbjct 826562 CTTTGGGACTGGGATGCTCTCAAAGCTGAGATT--GCCCAACATGGCCTCCGCAACTCCC 826505 Query 20385 TGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GCT 20443 | ||||| || || |||||||| ||||| || | ||||| | || |||||||| ||| Sbjct 826504 TTCTCGTGGCTCCTATGCCGACTGCCTCTACATCTCAGATTCTCGGTAACAACGAATGCT 826445 Query 20444 TTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATG 20503 || ||||| || || |||||||||||| || ||| || || || |||||| || Sbjct 826444 TT-GAGCCTTATACCTCCAACATCTACTCCCGCCGTGTTCTCGCTGGCGAGTTCCAGATC 826386 Query 20504 GTAAACAAGCACCTGGTC-CGCGA----CTTGCAGAAGATCGATATGTGGTCGCCCAAAA 20558 || ||| | |||||| | | | |||| || || | ||||||| ||| | Sbjct 826385 GT---CAATC-CCTGGTTGCTCAAAGATCTTGTCGAC-ATGGGCTTGTGGTCCGACAACA 826331 Query 20559 TTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTGGAT-------ATCCCC 20611 | |||||| || || |||| || || || | || |||| |||||| Sbjct 826330 TGAAGAATAGGATCATC---GCCGAAGGTGGC-TCTATTCAGCGGATCCCCAACATCCCC 826275 Query 20612 CAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGAC 20671 | | |||| | | |||| ||| || ||||||||| |||||| ||| | | Sbjct 826274 GATGATATCAAAGCACTCTACAAGACTGTGTGGGAAATCTCACAGAGACATATCCTGCAG 826215 Query 20672 ATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAG 20731 ||||| || ||||| ||||||| |||||||||||| ||||| |||||| || |||| || Sbjct 826214 ATGGCTGCAGATCGTGGCGCCTTCATCGACCAGTCTCAGTCTCTCAATATCCACATGAAG 826155 Query 20732 AATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAG 20791 | || | | ||| ||| | | ||| ||||| | || ||| | || |||||| Sbjct 826154 GAACCTACCATGGGCAAGATCACCTCTATGCACTTTGCTGGGTGGAAGCTCGGTCTCAAG 826095 Query 20792 ACGGGCATGTACTATCTGCGGAC 20814 |||||||||||||| || || || Sbjct 826094 ACGGGCATGTACTACCTTCGAAC 826072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 ||||| | ||||||||||||||||||||||| |||||| || | ||||||| Sbjct 826072 GTTCGAAGGTAGTACATGCCCGTCTTGAGACCGAGCTTCCACCCAGCAAAGTGCATAGAG 826131 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | || | || |||| ||| ||||| ||||| |||||||||||| Sbjct 826132 GTGATCTTGCCCATGGTAGGTTCCTTCATGTGGATATTGAGAGACTGAGACTGGTCGATG 826191 Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332 | || || || || || ||||| Sbjct 826192 AAGGCGCCACGATCTGCAGCCAT 826214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524457172000