Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 181 1e-40 seq1 105 7e-18 seq3 93.3 5e-14 >seq4 Length=3241893 Score = 181 bits (200), Expect = 1e-40 Identities = 357/519 (69%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA-ATCACCCTCAGAT 53325 |||||||| || ||||| |||| ||||| ||||| || || || ||| ||| || || Sbjct 827760 AAGTACTTCACACACGCTTCGCCGACCCTCTTCAATGCGGGGACCCCATCGCCC-CAAAT 827702 Query 53326 GTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCT 53385 ||| ||||||||| | | |||||||| ||| ||||| |||||||| || || || Sbjct 827701 GTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGCATCGAGGGCATCTATGACACACT 827642 Query 53386 CAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG- 53444 ||| ||| ||| |||||||| | || ||||| ||| | | || || | || Sbjct 827641 GAAGACGTGCGCCATGATCTCCAAAACCGCAGGCGGTATTGGTCTGAA-TG-TCCACCGG 827584 Query 53445 -TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT-GGAATCGTGCC 53502 | ||||| | ||| | || || || || ||| || ||| || || | || Sbjct 827583 ATTCGTGCTACCGGGGCCTACATTGGTGGAACAAATGGCA-CGTCGAACGGTCTCATCCC 827525 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 |||||| || |||| |||||| || || |||| || | || || || || ||| Sbjct 827524 TATGCTTCGTGTCTACAACAATACCGCTAGGTATGTTGATCAAGGCGGCAACAAACGCCC 827465 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 || |||| ||||||||||| ||||| |||||||||||| || | | || || || || Sbjct 827464 AGGTGCGTTTGCCATCTACCTGGAGCCATGGCACGCCGACGTTTTCGGCTTCCTTGACCT 827405 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGAT 53682 || |||||| || | ||||| | ||| |||||| | ||| || ||||||| Sbjct 827404 CCGGAAGAATCATGGCAAAGAAGAAGTTCGCGCTCGTGACTTATTTTACGCGTTGTGGAT 827345 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 ||||||||| |||||| | ||| || || ||| |||||| || ||||||||||| Sbjct 827344 TCCGGACCTGTTCATGAAGCGCGTGCAGGAGAACGGCGAGTGGACACTCATGTGCCCGAA 827285 Query 53743 CGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||| || || || || || || || ||||| ||||| Sbjct 827284 CGAATGTCCTGGTCTAGCGGACGTTTATGGTGATGAGTT 827246 Score = 118 bits (130), Expect = 1e-21 Identities = 305/455 (67%), Gaps = 15/455 (3%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||||||||| |||||||| || ||||| || || || || ||||||| | Sbjct 826520 GGCCTCCGCAACTCCCTTCTCGTGGCTCCTATGCCGACTGCCTCTACATCTCAGATTCTC 826461 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || |||||||| || ||||| || || ||||||||||| ||||| || || Sbjct 826460 GGTAACAACGAATGCTTTGAGCCTTATACCTCCAACATCTACTCCCGCCGTGTTCTCGCT 826401 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGT----CAAGGACCTGCAGAAGATCAACAA 55653 || ||||| || |||| ||| | ||| || ||| || || | || | Sbjct 826400 GGCGAGTTC--CA-GATCGTCAATC-CCTGGTTGCTCAAAGATCTTGTCGACATGGGCTT 826345 Query 55654 GTGGAACCCGCAGATCAAGAC--GGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATC 55709 |||| | | || |||| |||| | || ||| || || || | ||| ||| Sbjct 826344 GTGGTCCGACAACATGAAGAATAGGATCATC-GCCGAA-GGTGGCTCTATTCAGCGGATC 826287 Query 55710 TGGAGATTCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | ||| | | | |||| | | ||| ||| |||||||| || |||||| Sbjct 826286 CCCAACATCCCCGATGATATCAAAGCACTCTACAAGACTGTGTGGGAAATCTCACAGAGA 826227 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | | | | ||| ||| |||||||| || | |||||||||||| |||||||| || Sbjct 826226 CATATCCTGCAGATGGCTGCAGATCGTGGCGCCTTCATCGACCAGTCTCAGTCTCTCAAT 826167 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 ||| |||| || | ||| | ||| |||| | | ||| ||||||||| ||||||||| Sbjct 826166 ATCCACATGAAGGAACCTACCATGGGCAAGATCACCTCTATGCACTTTGCTGGGTGGAAG 826107 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||||||||| |||||||| || || || Sbjct 826106 CTCGGTCTCAAGACGGGCATGTACTACCTTCGAAC 826072 >seq1 Length=5232100 Score = 105 bits (116), Expect = 7e-18 Identities = 302/458 (66%), Gaps = 15/458 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || |||| |||||||||||||| Sbjct 3073042 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAAGGAGATGTTCTCCATG 3073101 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA---TAGGCTTCTCCCCAAACTGTGCCATGAGG 74579 ||||||| ||||| | || ||||| | || || | | || | || || Sbjct 3073102 AAGTCGAAGGGGTTGGTGGCGTTGTAAACCTTGGGATTGCCGAGAGACAATAGCA---GG 3073158 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | ||||| || ||| || | | ||| |||| || | Sbjct 3073159 CGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGAGTTCATACCGAGCAGCGCG 3073218 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 || |||||||||||||||| ||||| ||| | || | ||| || || | Sbjct 3073219 CAAGGCAGTGCCTCGGTGAGGAACTCTTGCTCGATCTTGACCGCCTCGGTGATGATGTGC 3073278 Query 74700 TGAATGTCTTT---GGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 | | || || | |||| | | | || | ||| | || | || ||| || Sbjct 3073279 TCGACCTCCTTCTTGCTTGGGCGTGTGT---TGAGAAGGGAGAAGAGGAGGCA-GGCGAA 3073334 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || ||| ||| ||||| | || | ||||||||| || | ||||| ||||| Sbjct 3073335 GTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGGCCGGGCAT 3073394 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || || |||||||| | ||| ||||||| |||||| ||||||||||| || || || Sbjct 3073395 GAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAAATACCCTC 3073454 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 |||| |||||||| ||||| || |||||| |||| Sbjct 3073455 GACAGCGGCAAAGGCTACAAGACGCGACGCGAA-GGTG 3073491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 75022 TGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGT 75081 |||| |||| || |||||||||||||| || || ||| | | |||| | | | Sbjct 3073657 TGTCGATCAACAGCGAGTACGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCAT 3073716 Query 75082 AGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCA 75141 |||| | |||||||||| || ||||| || ||| | | | | |||||| Sbjct 3073717 AGAAGCATCGCGCCTCTGGTATTTGTACCTCGCCGCTAAAGCGCTCGACCAGATTCTCGT 3073776 Query 75142 TGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCAT 75201 ||||||||||||| || |||||||| || || || || | || ||| |||||||| Sbjct 3073777 TGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGACGTGTGAAATGAAGAAGCGCTCAT 3073836 Query 75202 CGTCAGTGAG---TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCG 75258 ||||| |||| |||| ||| || | ||||| | | ||| ||||| ||| | | Sbjct 3073837 CGTCATTGAGCCTCTTGTTCCAGTCGTGAAGGTCTTTGGAGAGATCGATCTCTTCGGCGG 3073896 Query 75259 TCCAGAA 75265 ||||||| Sbjct 3073897 TCCAGAA 3073903 >seq3 Length=4703234 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 118016 CCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGT 118075 ||||||||||| ||| || ||||| ||| ||||||||||| | | ||||||| || Sbjct 3752003 CCCTTGATATGACTACCATCGTGATCCTGATCAGTCATGATCATGATGTGGCCGTAACGG 3752062 Query 118076 AAATCTCTCAGGGAGT---TATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAGG 118132 | | ||| ||| || |||| | || |||||| || || | || |||||| | | Sbjct 3752063 AGACCTC---GGGCGTCGGTATACTCTTTCTTATGTTGCAGGCCAATGAACTTTTTGATG 3752119 Query 118133 TTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGC 118192 || || || | |||| | | || | |||| || ||||| ||||| || | Sbjct 3752120 TTCTGAATCTCAACGTTTTTGGATATTTGATCAATGGATGCATCCCGTACGTTCAGCATC 3752179 Query 118193 TTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAAC-GCTCAAGCCGGCAAT 118251 ||||| || || || || |||||||| ||| || ||||| |||| |||||| | Sbjct 3752180 TTACCACGAAGAGGGAAGACGCCAAAAAGGTCTGGGTTTACAACGGCTC-GGCCGGCCAA 3752238 Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCA 118296 |||||| | || ||||| |||||||||| ||| | ||||| Sbjct 3752239 AGCAAGCAAACTAGCGGAGTCTCCCTCGGTAAGAATCAAGGTGCA 3752283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215657990000