Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3 170 2e-37
seq4 104 3e-17
seq8 98.7 1e-15
>seq3
Length=4703234
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||||||||| ||||| || |||||||| |||
Sbjct 3808278 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAATCATCG 3808337
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||| | || ||||||||||||||||| |||||||| || ||
Sbjct 3808338 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGATCAA 3808397
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| ||||| || | || || || | ||||| ||
Sbjct 3808398 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACTACAAC 3808457
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || | || | ||||| ||||||||
Sbjct 3808458 ATCCAGAAGGAGTCCACCCTACACTTGGTGCTCCGTCTACGCGGTGG 3808504
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||||||||| || || || ||||| || |||
Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || ||||| | || || |||||||||||||| || ||||| || ||
Sbjct 3808110 GATACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAA 3808169
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| ||||| |||||||||| || |||||| | ||||| ||
Sbjct 3808170 CAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAAC 3808229
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || || ||| | ||||| || |||||
Sbjct 3808230 ATCCAGAAGGAGTCTACACTCCACCTCGTCCTTCGTCTCCGTGGTGG 3808276
Score = 165 bits (182), Expect = 9e-36
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||| | || || |||||||||||||| || || || || ||
Sbjct 3808566 GATACTATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAA 3808625
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || || || ||||| || ||||||| ||||| | ||| ||||| ||
Sbjct 3808626 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGC-GACTACAA 3808684
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || ||||| | || | ||||| ||||||||
Sbjct 3808685 CATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGCGGTGG 3808732
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| ||| | || | ||| ||||| |
Sbjct 3807846 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGTCC 3807905
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || ||||||||||| | || || || || |||
Sbjct 3807906 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3807965
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || || |||| || |||||| | ||||| || |||| ||||| || ||||||||
Sbjct 3807966 CAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTTCAC 3808025
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | ||||| ||||||||
Sbjct 3808026 CTCGTCCTTCGTCTCCGCGGTGG 3808048
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || ||||||||||| ||||| || ||||| ||||| |
Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 3808794 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 3808853
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || || || ||||| ||||| || | || || || | || || ||
Sbjct 3808854 CAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAAC 3808913
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || |||||||| || || || | || | ||||| || || |||||
Sbjct 3808914 ATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGGACA 3808963
>seq4
Length=3241893
Score = 104 bits (114), Expect = 3e-17
Identities = 133/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096
||| || || |||||||||||||||||||| || |||||| || | |||||||||
Sbjct 826071 CGTTCGAAGGTAGTACATGCCCGTCTTGAGACCGAGCTTCCACCCAGCAAAGTGCATAGA 826130
Query 80097 ACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156
||| ||| | | || || | || |||| ||| || |||||||||||||| |||
Sbjct 826131 GGTGATCTTGCCCATGGTAGGTTCCTTCATGTGGATATTGAGAGACTGAGACTGGTCGAT 826190
Query 80157 GAAAGCCCCACGATCTGCCGCCAT-TTCAATAATTGACTTTTGTGGAATTTCCCATACTG 80215
||| || ||||||||||| ||||| | || | || | | |||| |||||||| || |
Sbjct 826191 GAAGGCGCCACGATCTGCAGCCATCTGCAGGATATGTC-TCTGTGAGATTTCCCACACAG 826249
Query 80216 T 80216
|
Sbjct 826250 T 826250
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967
|| || ||||||||||| || ||||| |||| | || ||| || ||| || |||||
Sbjct 826954 GATGCGAGATTGCACACTGCGACCTCCTCAGGAGAGGTGTACTGGATGATCTCTGTGCAA 827013
Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027
| || || || || ||||| || |||||||| |||| |||||||| ||
Sbjct 827014 AGGTTGGAGCTGCGGATCGTTCCCAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCT 827073
Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087
||||| |||||| ||| | || |||||| || | || ||||||||| | ||||| |
Sbjct 827074 TTGTACAGCATGTATGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAAAGC 827133
Query 81088 T 81088
|
Sbjct 827134 T 827134
>seq8
Length=2851179
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
||| |||| ||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct 895150 AAACTTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAG 895209
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || || || | || ||||| | ||||| || |||| ||||| || || || ||
Sbjct 895210 CAGCTGGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 895269
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633
|| ||| | ||||| || || |||
Sbjct 895270 CTCGTCCTTCGTCTGCGTGGAGGA 895293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310043556000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |