Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3 136 3e-27
seq8 96.9 3e-15
seq7 95.1 1e-14
>seq3
Length=4703234
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||||||||| | ||||| || || || ||| | ||
Sbjct 3808278 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAATCATCG 3808337
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | ||||| || ||||| ||||| || ||||| || || ||||||
Sbjct 3808338 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGATCAA 3808397
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| ||||| || | |||||| | || | ||||| ||||||
Sbjct 3808398 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACTACAAC 3808457
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| |||| ||||| | ||| | || ||||| ||
Sbjct 3808458 ATCCAGAAGGAGTCCACCCTACACTTGGTGCTCCGTCTACGCGGTGGTAT 3808507
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||||||||||||||| | ||||| || || || || | |
Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || ||||| || ||||| ||||| || ||
Sbjct 3808794 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 3808853
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || | |||||| | || | ||||||||||||
Sbjct 3808854 CAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAAC 3808913
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| ||||| |||||| | || ||||| | ||| |||| || ||
Sbjct 3808914 ATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || ||||||||| | ||||| ||||| || ||| | |||
Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | ||||| || || || ||||| || ||||| || || ||||||
Sbjct 3808566 GATACTATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAA 3808625
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
|||||| | || | |||||| || || | || || | || |||| ||| |||||
Sbjct 3808626 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGA-TGGCCGTACGTTGAGCGACTACAA 3808684
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 3808685 CATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGCGGTGGTAT 3808735
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||||||| | || || || || ||||| | || ||| | || || | || ||
Sbjct 3807846 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGTCC 3807905
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || ||||| || ||||| || || || || ||||| || || | |||||||||
Sbjct 3807906 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3807965
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| ||||||| | ||| | ||||| |||||||| || ||||||||||| | ||
Sbjct 3807966 CAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTTCAC 3808025
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || | ||| | || ||||||||
Sbjct 3808026 CTCGTCCTTCGTCTCCGCGGTGGCAT 3808051
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || ||||||||||| | || || || || |||||| | ||
Sbjct 3808049 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATC 3808108
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | || || | || || || || || ||||| || ||||| || || |||||
Sbjct 3808109 GGATACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 3808168
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||| ||||| || | || || | ||| | ||||| |||||
Sbjct 3808169 ACAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAA 3808228
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| || | || | || | ||| | || ||||| ||
Sbjct 3808229 CATCCAGAAGGAGTCTACACTCCACCTCGTCCTTCGTCTCCGTGGTGGTAT 3808279
>seq8
Length=2851179
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
||| |||||||||| || ||||| || || || || ||||| || || | |||||| ||
Sbjct 895150 AAACTTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAG 895209
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| |||||||| | ||| ||||||| |||||||| || |||||||||||| | ||
Sbjct 895210 CAGCTGGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 895269
Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214
| || | ||| |||| || ||
Sbjct 895270 CTCGTCCTTCGTCTGCGTGGAGG 895292
>seq7
Length=3010262
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122
|||||| || || || |||||||||||||| || ||||| ||||||||| | || | |
Sbjct 2377963 GTCAAATCCAAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAACAGCGTCTCATCTTC 2377904
Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182
|| ||||| || | || ||| | || | |||||||||||| || |||||||||
Sbjct 2377903 GCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATCCAGAAGGAGTCG 2377844
Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| | ||| |||| | ||| |||| || |||||
Sbjct 2377843 ACGCTGCATCTGGTCCTTCGTCTGCGTGGCGGCAT 2377809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918128176000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |