Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 >seq3 Length=4703234 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || ||||| || ||||| ||||| || || Sbjct 3808278 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAATCATCG 3808337 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| || || | || || ||||| Sbjct 3808338 GATACCATTGACAATGTCAAGTCGAAGA-TTCAGGACAAGGAGGGCATTCCTCCGGATCA 3808396 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || ||||| || || ||||||| || ||| | ||| ||||| Sbjct 3808397 ACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACTACAA 3808456 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| |||| || || Sbjct 3808457 CATCCAGAAGGAGTCCACCCTACACTTGGT 3808486 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || |||||||| ||||| || || || || Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||||| || || | || || |||||| Sbjct 3808110 GATACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAA 3808169 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || || || | ||||| || ||| |||||| Sbjct 3808170 CAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAAC 3808229 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 3808230 ATCCAGAAGGAGTCTACA 3808247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009394025400