Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 158 3e-33 seq7 91.5 4e-13 seq8 89.7 1e-12 >seq3 Length=4703234 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| |||| | || | ||||| Sbjct 3808261 AGGACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCC 3808202 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| ||||| ||||| || || || || || |||||||| Sbjct 3808201 TCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCC 3808142 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||||| || || | |||||| || | |||||||||| Sbjct 3808141 TGGATCTTCGACTTCACGTTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTC 3808082 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 3808081 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808050 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || || |||| ||||| |||| | ||||| || ||| Sbjct 3808489 AGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCT 3808430 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||| || || ||||| || |||||||| Sbjct 3808429 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCC 3808370 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||| || || | ||| || || | ||| |||||| Sbjct 3808369 TGAATCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACCTCGAGCGTAATCGTC 3808310 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 3808309 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808278 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || ||||| || || | |||||||||| | ||||| || ||| Sbjct 3808945 AGCACCAAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGGCCGTCT 3808886 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 3808885 TCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 3808826 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || || || || | ||| || ||| Sbjct 3808825 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACCTCGAGCGTAATGGTC 3808766 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||| || | ||| | |||||| Sbjct 3808765 TTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3808734 >seq7 Length=3010262 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || || || || || |||| ||||||||| | || | || || Sbjct 2377827 AGGACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCC 2377886 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||||||||| || || ||||| ||||| Sbjct 2377887 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGGGGGATGCCTTCTTTGTCC 2377946 Query 225622 TGGATCTT 225629 |||||||| Sbjct 2377947 TGGATCTT 2377954 >seq8 Length=2851179 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| |||| | || | || ||| Sbjct 895277 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 895218 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || ||||| || ||||||||| Sbjct 895217 TCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 895158 Query 225622 TG 225623 || Sbjct 895157 TG 895156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530436034700