Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 138 8e-28 seq8 87.8 1e-12 >seq3 Length=4703234 Score = 138 bits (152), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| |||||| ||||||||||| |||| ||| || |||| || Sbjct 3808487 CACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTC 3808428 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||| ||||| | ||| | || ||||| ||| Sbjct 3808427 GAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTG 3808368 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 |||||| ||| || ||| | ||||| || | ||||| ||||| | |||||||||| Sbjct 3808367 AATCTTCGACTTGACATTGT--CAATGGTATCCGATGATTCAACCTCGAGCGTAATCGTC 3808310 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | |||||| |||||||| ||||| Sbjct 3808309 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808278 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 3808258 ACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCG 3808199 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||| ||||| | ||| | || ||||| ||| Sbjct 3808198 AGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCCTTGTCCTGG 3808139 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | ||||| || | ||||||||||| | ||| |||||||| Sbjct 3808138 ATCTTCGACTTCACGTTGTCGATGGTATCCGATGATTCCACCTCGAGCGTGATCGTCTTG 3808079 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | |||||| |||||||| |||||| Sbjct 3808078 CCGGTCAAGGTCTTGACGAAGATCTGCATG 3808049 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | ||||| ||| || || ||||| || ||||||||||||| Sbjct 3808961 TCCGCCACGCAGACGGAGCACCAAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATCGGA 3808902 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| || |||| || |||||||| || || ||||| | |||||||| || | || Sbjct 3808901 GAGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGGTGG 3808842 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| ||| | | | ||||||||| ||| || || Sbjct 3808841 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGCTGGACTCGAC 3808782 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | |||||| ||||| || || || ||||| |||||||||||||| Sbjct 3808781 CTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3808734 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | | ||||| |||||| || |||||| ||||||||||| Sbjct 3808739 TTGCATACCACCGCGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTA 3808680 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || | || || |||||||| ||||| ||||| | |||||| ||||| Sbjct 3808679 GTCGCTCAACGTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATC 3808620 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || ||||| ||| |||||| ||| | | | || || |||| || Sbjct 3808619 CGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCGGATGA 3808560 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | |||||| ||||| || || || ||||| ||||| |||||||| Sbjct 3808559 TTCAACCTCAAGCGTAATGGTCTTGCCGGTAAGCGTCTTGACGAAAATTTGCAT 3808506 Score = 107 bits (118), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| |||| || ||| | || ||| Sbjct 3808030 ACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCTTCC 3807971 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| |||||||| || | || | || ||||| ||| Sbjct 3807970 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 3807911 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | ||| |||||||| | || || ||||| Sbjct 3807910 ATCTTGGACTTCACATTGTCGATTGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTG 3807851 Query 44309 CCCGTGA 44315 || |||| Sbjct 3807850 CCGGTGA 3807844 >seq8 Length=2851179 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || ||| |||| ||| Sbjct 895274 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 895215 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||| |||||||| |||||||| |||| || | || ||||| || Sbjct 895214 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 895159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990180630850