Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 154 4e-32 seq7 104 6e-17 seq8 87.8 4e-12 seq2 86.0 2e-11 >seq3 Length=4703234 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || || |||||||| || | ||| Sbjct 3808737 CAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGCGAC 3808796 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 3808797 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAG 3808856 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||||||||| || | ||||| ||||||| ||| | Sbjct 3808857 CGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAACATT 3808916 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || ||||| |||| Sbjct 3808917 CAGAAGGAATCGACCCTGCA-CTTG 3808940 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || |||||||| |||||||||||| || || Sbjct 3808053 CAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCGGAT 3808112 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| || || ||||||||||| || || Sbjct 3808113 ACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAACAG 3808172 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || |||||||| ||||| | || || |||| || ||| || Sbjct 3808173 CGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAACATC 3808232 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 3808233 CAGAAGGAGTCTACACTCCACCTCGT 3808258 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| ||| ||||| ||||| || || || Sbjct 3807844 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGT 3807903 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| ||||||||||| || | ||||||||||| | Sbjct 3807904 CCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGCA 3807963 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| |||||||| | || || |||| || ||| |||| || || || || || | Sbjct 3807964 AGCAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTTC 3808023 Query 178123 ATCTTGT 178129 | || || Sbjct 3808024 ACCTCGT 3808030 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || ||||| || |||||||| ||| || || Sbjct 3808281 CAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAATCATCGGAT 3808340 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || || |||||||| || || Sbjct 3808341 ACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGATCAACAG 3808400 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||||||||| || | ||||| |||| || ||| || Sbjct 3808401 CGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACTACAACATC 3808460 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 3808461 CAGAAGGAGTCCACCCTACA-CTTG 3808484 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || || || || ||||| ||| || || Sbjct 3808509 CAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCCGAT 3808568 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||| ||||| || || Sbjct 3808569 ACTATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAACAG 3808628 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || ||||| | || | ||| || ||| || Sbjct 3808629 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGCGACTACAACATC 3808688 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 3808689 CAGAAGGAGTCAACCCTTCA-CTTG 3808712 >seq7 Length=3010262 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || |||||| ||||| |||||||||||||| ||||| || ||||| || || || Sbjct 2377969 GATAATGTCAAATCCAAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAACAGCGTCTC 2377910 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 |||||||| || || |||||||| || || | || || |||||| ||| |||| || Sbjct 2377909 ATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATCCAGAAG 2377850 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || |||||||| || Sbjct 2377849 GAGTCGACGCTGCATCTGGT 2377830 >seq8 Length=2851179 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 177995 CGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTT 178054 |||| |||||| |||| ||||| || || || || || |||||||| || | ||||| Sbjct 895142 CGTCTAACAAAC--TTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTT 895199 Query 178055 CGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATC 178114 ||||||||| ||||| ||||| || | || ||| |||| || ||| |||| || || || Sbjct 895200 CGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTC 895259 Query 178115 AACACTGCATCTTGT 178129 || || || || || Sbjct 895260 GACCCTCCACCTCGT 895274 >seq2 Length=5130782 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||| | ||||| ||||| || ||||| | |||| || ||| |||| Sbjct 4781416 AAATATTCATTAAAACACTCACCGGTAAAACAGTTGAAATCGAATGCGAGTCCTCTGACA 4781475 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 ||| ||| || ||||| || || ||||| ||||||||||| || || |||||||||| Sbjct 4781476 CCACCGATAATATCAAAAGTAAAATCCAGGATAAAGAAGGAATACCCCCAGACCAGCAAC 4781535 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAG 178074 | || || || |||||||||||| |||| Sbjct 4781536 GCCTCATATTTCTCGGAAAACAGCTAGAAG 4781565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730428859700