Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq50 165 1e-35 seq1363 91.5 2e-13 >seq50 Length=66349 Score = 165 bits (182), Expect = 1e-35 Identities = 762/1185 (64%), Gaps = 32/1185 (3%) Strand=Plus/Minus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 |||| ||| || ||||| ||||| || ||||||| || | | || | | ||||| Sbjct 64573 GCAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCC 64514 Query 53765 GTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 53821 ||||| || || |||| ||| || || || || | || || ||||| ||| Sbjct 64513 GTGCACAGGTTGGAGCTACG---GATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTG 64457 Query 53822 CACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881 || |||||||| || || || || || |||||||||| |||||| ||| | || || Sbjct 64456 CAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCG 64397 Query 53882 TTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT-TTCT-CTT-TCGTA--TA 53936 | ||| | | || | || || | ||| |||| ||| ||||| | Sbjct 64396 TACCACAGCTTCTGGGCGCGGAC---AGTTTCACGGCCCTTGTTCTGCTTCTCGTAGCTC 64340 Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 ||| | | | |||||||| || || | || | | | || || || || | | Sbjct 64339 TCGTACAGAGCC--TCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGG 64282 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 | ||||| | | |||||| |||| |||| || || ||||| || ||||| || |||| Sbjct 64281 GGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCC 64222 Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 54116 | ||||| || ||||| | || | | ||||| || || ||||| |||| Sbjct 64221 ACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGAT 64162 Query 54117 CGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 | ||||| |||| | | ||| | ||||| || || | ||| |||| | | | || || Sbjct 64161 CAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGG 64103 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | ||| ||||| || || || | | ||| ||| Sbjct 64102 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGA 64043 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 || | ||| || |||| || ||||| || || || ||| | |||||||| | Sbjct 64042 ATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAAT-TCG 63984 Query 54296 CTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | | | ||||| || || || || | || ||||| || || || || | || Sbjct 63983 GTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGT 63924 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 ||| ||||| || || || || || ||| |||| | | || || || |||||| || Sbjct 63923 ATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTG 63864 Query 54415 GTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 | ||| ||| || ||||| || | || || || ||||| || || |||||| | Sbjct 63863 AGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTG 63805 Query 54474 AAA-GTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 | | |||| | || ||||| || || || || ||| ||||| || || ||| Sbjct 63804 ACATGTAG-TCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCG 63746 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 |||||||| | |||||| || || | ||| | | |||| | ||| || | ||| Sbjct 63745 ACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAGGTAT 63686 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 54652 || || | || || || ||||| | | ||| |||||||| ||||| | ||| Sbjct 63685 GAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACACTATA 63626 Query 54653 ACTGAGTTGAGTTTAT---CCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATA 54709 | |||||||| | | | | || | | | || | || | ||| | || || Sbjct 63625 GCCGAGTTGAGCTCCTCTGCGTGATCCTGGATGACCTTGTACACAG-AATCC--GAGATC 63569 Query 54710 ATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCA 54769 || || || || ||||| || || ||||| || | | | ||| | || ||| || Sbjct 63568 ATAGGCTGGTGCTTGCCATTCTTTGGGTTGACGTATGTGTAGAGATCTTCCACGACTGCA 63509 Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 ||| | || ||||| | ||||| ||||||||||| || || | || || || ||| Sbjct 63508 GAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGGGCTGCAAGGATG 63449 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGC 54873 || ||||| ||||| |||| | || || ||||||| | ||||| Sbjct 63448 GCGTAATCAGGATG-TGTGGTGGTCATGTAGGCTGCTGTCTCGGC 63405 >seq1363 Length=52244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| | |||||||| | | || | |||||||| || || || Sbjct 38597 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGA 38538 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || |||||||| || ||||| || ||||| |||||||||||| ||||| Sbjct 38537 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAG 38478 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279 || || || || || || || |||| Sbjct 38477 ATACCCTCGACGGCAGCGAATGCAA 38453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709428707200