Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1500 86.0 5e-12 >seq1500 Length=44508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| ||| |||| || || ||||| || || || | | Sbjct 5142 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACGCTGGAGGTCGAGTCTTCG 5083 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| ||| ||| || || |||||| | || ||| || Sbjct 5082 GATACTATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 5023 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||||||||| || |||||||| | ||| | ||||| |||||| Sbjct 5022 CAACGTCTCATCTTTGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTTGCCGACTACAAT 4963 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || |||||||| || || |||||| ||||| Sbjct 4962 ATCCAGAAGGAGTCGACACTTCACTTGGTG 4933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428327438634200