Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1500 89.7 4e-13 seq400 82.4 6e-11 >seq1500 Length=44508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||||||||| || ||||| || || || Sbjct 4688 CCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4747 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| || || || || ||| | || || | ||||||||| || Sbjct 4748 AGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 4807 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | | | ||||| | | ||| Sbjct 4808 ATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACC 4867 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||||||||| | || ||||| || |||||||| Sbjct 4868 TCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | || |||||||| || || || ||||| || Sbjct 4916 CCACCACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCA 4975 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||| ||| ||||||||| | || || | |||||||| || Sbjct 4976 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGA 5035 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | |||||| | ||| Sbjct 5036 ATACCTTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACC 5095 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || | || ||||| || || ||||| Sbjct 5096 TCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| |||||||| ||||| || ||||| || ||||||| ||||| ||||| Sbjct 5458 GTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCG 5517 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | | ||||||||| || | ||| |||||||| ||||| || Sbjct 5518 GCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 5577 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | | ||| || || || ||| || | ||| |||||||||||||| Sbjct 5578 ACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5630 >seq400 Length=67953 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| || ||||| ||||| || Sbjct 23248 CCACCACGGAGACGGAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCA 23307 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| || || || || || | || || | |||||||||| ||| Sbjct 23308 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 23367 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | |||||||||||| |||||| Sbjct 23368 ATGCCTTCCTTGTCCTGGATCTT 23390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422250760094240