Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1363 181 1e-40 seq1500 131 2e-25 seq1257 104 2e-17 seq400 95.1 1e-14 >seq1363 Length=52244 Score = 181 bits (200), Expect = 1e-40 Identities = 212/283 (75%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| || |||||||||| || || | || || ||| Sbjct 37996 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAAGAAATCGATCTCTCC 38055 Query 116699 AAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||||| | | | ||||||| | ||| | || ||| |||| ||| |||||| || Sbjct 38056 AAGGATCTCCA-CGACTGGAACAAGCGTCTCAATGACGACGAACGCTTCTTCATCTCCCA 38114 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || ||||| ||||| ||| ||| ||||||||||||||||| |||||||||||||| Sbjct 38115 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTT 38174 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | || || || | | ||||| || |||||||||||||| |||||| ||||| Sbjct 38175 CTCGAGCGAAGTACAAATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGA 38234 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| || ||||| || | || || ||||||||||| ||| Sbjct 38235 GAATGTCCACTCTGAGACCTACTCCCTGCTCATCGACACATAC 38277 Score = 176 bits (194), Expect = 5e-39 Identities = 316/455 (69%), Gaps = 5/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||||| |||||| | | || | || |||| | | | || | Sbjct 38390 AGAAGGCCGACTGGGCTCTGCGATGGATCTCTGACAAGAACTCCACCTTTGCCAACCGTC 38449 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| ||||||||||| ||||||| || || || |||| || | Sbjct 38450 TCGTTGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGATCATTTGCATCCATCTTCT 38509 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || || || ||||| || || |||||| ||||||||||||||| | | Sbjct 38510 GGCTCAAGAAGCGTGGTCTGATGCCTGGTCTTACTTTCTCCAACGAGCTCATCTCTCGTG 38569 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| |||| |||||| ||||| |||| ||| | | | || || | Sbjct 38570 ACGAGGGCATGCACACCGACTTCGCCTGCCTGCTCTTCTCTCTTCTCAACACCCGCCCCA 38629 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | ||| || ||| ||||||| || || ||||| ||||| ||||| | Sbjct 38630 GCAAGGAGTCTGTCCAGGCCATCATCACCGAGGCTGTTGCCATTGAGCAAGAGTTCCTTA 38689 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 ||| || ||||| |||| | |||| || | || || || | |||| || ||||| Sbjct 38690 GCGACGCCCTGCC-ATGCGCTTTGCTCGGCATGAA-CGCCAAGCTCATGTGCCAGTACAT 38747 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||| || ||| | ||||| |||| |||| | | ||||| |||| || | | Sbjct 38748 TGAGTTCGTTGCTGACCGTCTGCTTCTCGCTCTGGGCAACACCAAGGTCTACCACGCCAC 38807 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 ||||| | ||||| ||| | |||||| |||| Sbjct 38808 GAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 38842 >seq1500 Length=44508 Score = 131 bits (144), Expect = 2e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| |||| || || || |||||| | | | | |||||| Sbjct 5632 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGG 5573 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| ||||||||||| | |||||||| || | |||| ||| |||| Sbjct 5572 CGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGTTTGATCTTCGCCGGCA 5513 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| |||||||| |||||||||||| |||||||| |||| || | Sbjct 5512 AGCAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCC 5453 Query 40892 ATCTAGT 40898 | || || Sbjct 5452 ACCTTGT 5446 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| || || ||||| ||| |||| || || || |||||| | | | | |||||| Sbjct 5348 TCACCGGAAAGACCATAACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGG 5289 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| |||||||| ||| |||||||||| || || || | ||| || | Sbjct 5288 CCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAA 5229 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | || || || |||| || ||||| |||||||||||| ||||||||| | || |||| Sbjct 5228 AGCAACTTGAGGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAGTCTACTCTGC 5169 Query 40892 ATCTAGT 40898 |||| || Sbjct 5168 ATCTCGT 5162 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || || | || || ||| | | | Sbjct 4914 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACGATTACTTTGGAGGTGGAATCAAGC 4855 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 4854 GATACCATTGACAACG-TAAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 4796 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || || || || |||| | || || ||| ||||| Sbjct 4795 GCAGCGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGCAGGACGCTTGCCGATTACAA 4736 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||||||| || Sbjct 4735 CATCCAGAAGGAGTCCACGCTCCA 4712 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || ||||| | | Sbjct 5142 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACGCTGGAGGTCGAGTCTTCG 5083 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| ||| |||| ||||| || || || || | ||||| Sbjct 5082 GATACTATTGACAACG-TCAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCA 5024 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| |||||||| ||| |||| || | || || || ||||||||| Sbjct 5023 GCAACGTCTCATCTTTGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTTGCCGACTACAA 4964 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 4963 TATCCAGAAGGAGTCGACACTTCA 4940 >seq1257 Length=334001 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || ||||||| ||| || || ||||| || Sbjct 8787 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAG 8846 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||| || |||||||||||||||||||||| | || || || Sbjct 8847 GACGGCCGCACTCTTGCCGACTACAACATCCAGAAGGAGTCGACCCTCCA 8896 >seq400 Length=67953 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || ||||| ||| |||||||||| || || |||| || Sbjct 23398 TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCG 23339 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || || || || || || | |||||||| |||||||||||||||||||||| | | Sbjct 23338 CCGGAAAGCAACTCGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCAA 23279 Query 40886 CGCTGCA 40892 | || || Sbjct 23278 CACTCCA 23272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208638006400