Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1500 127 2e-24 seq1257 87.8 2e-12 >seq1500 Length=44508 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || || || || | || ||| | |||||| || | ||| |||||| || || |||||| Sbjct 4682 TACTGACCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAA 4741 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || |||| |||| || || ||||||||||| || ||||| ||||||||||| Sbjct 4742 TCGGCAAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCA 4801 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 | || | | |||||||||| ||| | || | | ||| | | | || ||||| || Sbjct 4802 GGAGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGA 4860 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || | || || || ||||| || || ||||| || ||||||||||| Sbjct 4861 TTCCACCTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || || || || || |||| || |||||||| || ||||| Sbjct 5464 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 5523 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 5524 ATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTGACATT 5582 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | |||||| || || || |||| |||||||| ||||| || Sbjct 5583 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5630 >seq1257 Length=334001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || || ||||| || || ||||| || | Sbjct 8909 ACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCC 8850 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| ||||| ||||||||||| | || | || |||||| Sbjct 8849 GTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 8790 Query 43088 GTC 43090 ||| Sbjct 8789 GTC 8787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805877739200