Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1500 113 3e-20 >seq1500 Length=44508 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | || || ||||| || |||||||||| Sbjct 4916 CCACCACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCA 4975 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||||||||||||| || || ||||| || |||||||| || Sbjct 4976 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGA 5035 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| |||||| ||| | | | | || | ||| | || ||||| Sbjct 5036 ATACCTTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACC 5095 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| || || || || || || || ||||||||||| Sbjct 5096 TCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| | || || ||||| |||||||| |||| Sbjct 4688 CCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4747 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| | | |||| || | ||||| || || || ||||| ||||||||||| || Sbjct 4748 AGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 4807 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| | | | || | |||| | ||||| || Sbjct 4808 ATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACC 4867 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || |||||||||||||| || || ||||| ||||| Sbjct 4868 TCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || || || | |||| || ||||| ||||||||||||| Sbjct 5144 CCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCA 5203 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || |||||||| || ||||||||||| ||| Sbjct 5204 AGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 5263 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | |||| || || || Sbjct 5264 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACC 5323 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | || ||||| || ||||||| Sbjct 5324 TCGAGGGTTATGGTCTTTCCGGTGA 5348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| |||| || | ||||||||| ||||| Sbjct 5463 TTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 5522 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| || | || ||||||||| ||||| ||| | || Sbjct 5523 GATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATT 5582 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | | || | |||| || || || || | |||||||| |||||||||| Sbjct 5583 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGA 5632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323065542598400