Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq50 441 6e-119 seq1363 116 3e-21 seq1500 93.3 4e-14 >seq50 Length=66349 Score = 441 bits (488), Expect = 6e-119 Identities = 1222/1857 (66%), Gaps = 46/1857 (2%) Strand=Plus/Minus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 ||||||| || || |||||||| ||||| ||||| | |||||| || ||| || |||| Sbjct 65451 TGGTGCGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCGGCAAAGTGCATCG 65392 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | ||| | ||||| | || | |||||| |||||| | Sbjct 65391 AGGTGATCTTGCCCATGGTTGGCTCCTTCATGTGAATGTTCAGCGACTGTGACTGATCAA 65332 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || || ||||| | || | || ||| ||| |||||||| |||| Sbjct 65331 TGAAAGCACCACGGTCAGCAGCCATCTGAATGATGGTTCGCTGCGAGATTTCCCAAACGG 65272 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTAT 22382 ||||||| || | || |||| || || ||| || | ||| || | Sbjct 65271 TCTTGTAGAGCGTCTTGGTCTCCTCAGGGATGTTGGGGATTCTTGCAATGGAACCACCCT 65212 Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442 | || || || || || | || ||||| || ||| || | ||| |||| Sbjct 65211 CGGCAATAATGCGGTTCTTCATGTTCTCAGACCACAGGCCCATGTCGACGAGATCCTTGA 65152 Query 22443 CCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500 ||| ||| |||| || || || ||||| || | | || || || ||| ||||| Sbjct 65151 GCAGCCATG--GGTTGACAACCTGGAACTCACCCGCGAGCACACGTCGAGAGTAGATGTT 65094 Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560 |||||| |||| ||||| |||| |||||||| || ||||| | |||||| || || || Sbjct 65093 AGATGTGTACGGCTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGG 65034 Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCAT 22620 ||| || || | || | ||||| | | || || | | ||| || ||| | | Sbjct 65033 CATGGGAGCGATCAACAAAGAGTTGCGTACACCATGTTGAGCAATCTTGGCCTTCAACTC 64974 Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680 | ||||||||| || |||| || || || || |||||||||||| || | || Sbjct 64973 TGCCCAGTCCCAGAGGTCGGTGGGGGTGACGTT---CCACATATCGTACTGAAGGGTTCC 64917 Query 22681 GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA 22740 || | || || ||||| || || || |||||| | ||||| ||||| Sbjct 64916 CTGAGAAACGGGAGATCCCTCGTAGGTCTCATATGGACCAAGCTCCTTGGCAATGTCGCA 64857 Query 22741 GCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGC 22797 | | | || ||| || || ||||||||||| | |||| | ||| ||| Sbjct 64856 GGAAGAAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGC 64797 Query 22798 GGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAA 22856 | || ||| ||| | |||| |||| | ||| || || |||| ||| || | Sbjct 64796 CTCTGCCGAC----TCGAAAGGCAGGCGCAATGCGAGGAAAGCATCGGCCAGACCTTGTA 64741 Query 22857 CGCCTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAAGGA 22912 |||| |||||||| ||||||| | || || | |||||| | || Sbjct 64740 CGCCCATACCGATAGGTCGGTGACGGAAGTTGCTGCGGCG----TGCCTCCTCAACGGGG 64685 Query 22913 TACCAATTCGAATCGATTGTTCT-GTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNN 22971 || || || | | || ||| ||||||||| | ||| |||| | || | Sbjct 64684 TAGTGGTT-GACTTCAATGATCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTG 64626 Query 22972 NNNNNNNTCAAAGTCGTAAACGCC-CGATTGTA--CAACAAACTTGTTGACGGCGATCGA 23028 | ||||| | |||| || ||||| ||||||| | | ||| | || Sbjct 64625 AAGCTTCTGGAAGTCAAACTCGCCACGCTTGTAGTCAACAAAAGAGGGCAGGGCAAGAGA 64566 Query 23029 GGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAG 23088 ||||||||||| || || ||||| || || |||||||| ||||| || || || || Sbjct 64565 AGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAG 64506 Query 23089 ATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 ||| |||| || |||||||| || |||||||||| || || ||||| | ||| Sbjct 64505 GTTGGAGCTACGG---ATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATC 64449 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 |||||||||||| | || | || || ||| ||| | |||| ||| || ||||| Sbjct 64448 CTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAG 64389 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC--CTCGTACTTTTGGTACAAC 23263 |||| ||| | ||| || |||| ||| |||| | |||||| | | ||||| Sbjct 64388 CTTCTGGGCGCGGACA-GTTTCACGGCCCTTG-TTCTGCTTCTCGTAGCTCTCGTACAGA 64331 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || ||||| || ||||||| ||| || |||||||| | | | || ||||||||| Sbjct 64330 GCCTCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGA 64271 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 ||||| || | | || || |||| || ||||| || ||||| ||||||||| Sbjct 64270 GTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAG 64211 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 ||||| || |||||||| ||||||||||||||| |||||| | ||| | ||| | Sbjct 64210 AACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAGCCA 64151 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || || || ||||| ||||| ||||||| |||||| || || || | ||| ||||| Sbjct 64150 AAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCA 64091 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| |||||||| || || |||||||||||||| | ||||| || | ||||||||| Sbjct 64090 CCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTT 64031 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | ||| ||| | | || || | || |||| ||| |||| || | Sbjct 64030 GATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTGAGA 63971 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | | || || |||| || || || || || |||||||| || Sbjct 63970 CCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCG 63911 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 || ||||||||||| || | ||| | ||| || |||||||| || | ||| || Sbjct 63910 TCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTG 63851 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTA 23802 | || |||||||||||| |||||| || |||||| | ||||| ||| | || Sbjct 63850 CCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAG-TCATA 63792 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || ||||| ||||||||||| ||||| ||||| | ||||| ||||| | ||| Sbjct 63791 GGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCAT 63732 Query 23863 GTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 || ||| || | || | ||| | ||| | || || || |||||||| | | Sbjct 63731 GTGTTGCGGACGCTCAGCAACCTT---GCCATCTATGCGGAGGAGGTATGAACGCTCAAG 63675 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||| || || ||||| | | ||||| ||||| || |||| |||||| ||||| || Sbjct 63674 CGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACACTATAGCCGAGTT 63618 >seq1363 Length=52244 Score = 116 bits (128), Expect = 3e-21 Identities = 296/445 (67%), Gaps = 18/445 (4%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| || ||| | | || | || ||||| |||||||| ||||| ||||| || Sbjct 38432 CCACCTTTGCCAACCGTCTCGTTGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGAT 38491 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||||| | || || ||| | ||||| || || |||||||| || || || || || Sbjct 38492 CATTTGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTTACTTTCTCCA 38551 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || || || |||||||| | || || || || || ||||| | | ||||| Sbjct 38552 ACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTCTTCTCTC 38611 Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTT----GGACATTATCACCGAGGCGGTC 58193 || |||| | ||| | | | | | ||| || ||| ||||||||||| || Sbjct 38612 ---TTCTCAACAC-CCGCCCCAGCAAGGAGTCTGTCCAGGCCATCATCACCGAGGCTGTT 38667 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 || || || | ||||| | | ||| ||||| || || ||||||| |||||| Sbjct 38668 GCCATTGAGCAAGAGTTCCTTAGCGACGCCCTGCCATGCGCTTTGCTCGGCATGAACGCC 38727 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG- 58312 | | |||| ||||||||||||| ||||| ||| | || | |||| ||| || Sbjct 38728 AAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCTGCTTCTCGCTCTG---GGC 38784 Query 58313 -AGAGC---GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCG 58368 | | | ||| ||| || | | || || || || || ||| | |||||||| | Sbjct 38785 AACACCAAGGTC--TACCACGCCACGAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 38842 Query 58369 AGGGCAAGACAAACTTTTTCGAAAA 58393 |||||||| ||||| ||||| || Sbjct 38843 CTGGCAAGACCAACTTCTTCGAGAA 38867 >seq1500 Length=44508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || ||||| | || || || | || Sbjct 5142 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACGCTGGAGGTCGAGTCTTCG 5083 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 5082 GATACTATTGACAACGTCAAGGCAAAGATTCA-GGACAAGGAAGGTATTCCTCCAGACCA 5024 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || || || ||||| ||||||||||| ||| | ||| || || Sbjct 5023 GCAACGTCTCATCTTTGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTTGCCGACTACAA 4964 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| ||||| |||| || | ||| | || |||| Sbjct 4963 TATCCAGAAGGAGTCGACACTTCACTTGGTGCTCCGTCTGCGTGGTGGTA 4914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| |||| ||||| | ||||||| |||| | ||||| | Sbjct 5630 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGGCG 5571 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| ||| | || || |||||||||||| | || ||||| ||||| Sbjct 5570 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGTTTGATCTTCGCCGGCAAG 5511 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || ||| || | ||| || |||||||| || ||||| || || || Sbjct 5510 CAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 5451 Query 31397 CTGGTACT 31404 || || || Sbjct 5450 CTTGTCCT 5443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 167/243 (69%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || ||||| ||||| || | || || ||| | | Sbjct 4914 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACGATTACTTTGGAGGTGGAATCAAGC 4855 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || ||||||||| || | || || |||||| Sbjct 4854 GATACCATTGACAACGTAAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 4795 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || || | || ||| | ||| | |||||| ||| Sbjct 4794 CAGCGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGCAGGACGCTTGCCGATTACAAC 4735 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGTG 31430 || || || || || || || || |||| || | || | |||||| || |||| ||| Sbjct 4734 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGTCTACGTGGCGGTCAGTAAGC-GTG 4676 Query 31431 ACG 31433 ||| Sbjct 4675 ACG 4673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757261788800