Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq50 190 3e-43 >seq50 Length=66349 Score = 190 bits (210), Expect = 3e-43 Identities = 586/890 (66%), Gaps = 16/890 (2%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | | |||||| |||| |||| || || ||||| || ||||| || ||| Sbjct 64282 GGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATC 64223 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| || ||||| | | | | ||||| || || ||||| ||| Sbjct 64222 CACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGA 64163 Query 63354 TCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || ||||| |||| | | ||| | ||||| || || | ||| ||||| | | | || || Sbjct 64162 TCAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGG 64104 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || ||||| || ||||| || | ||| | ||| ||||| || || || | | ||| || Sbjct 64103 GCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGG 64044 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 ||| | |||||||||| | || ||||| || || || ||| | |||||||| | Sbjct 64043 AATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAAT-TC 63985 Query 63533 ACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | | | ||||| || || || || | || ||||| || || || || | | Sbjct 63984 GGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTG 63925 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 | || ||||| || || ||||| || || |||| | | || || || |||||| | Sbjct 63924 TATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCT 63865 Query 63652 GGTGACGAGT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 | | |||| ||| || ||||| || | || || || ||||| || || |||||| Sbjct 63864 GAGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGT 63806 Query 63711 GAAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63769 || | |||| | || |||||||| || || || ||| ||||| || || || Sbjct 63805 GACATGTAG-TCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGC 63747 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 ||||||||| | |||||| || || | ||| ||| ||| | ||| | | ||| Sbjct 63746 GACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAGGTA 63687 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || || | || || || ||||| | | ||| |||||||| ||||| | || Sbjct 63686 TGAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACACTAT 63627 Query 63890 AACCGAATTGAGCTTAT---CCTTATATTTGTTAACTATATCCATGGTAATACTTGAAAT 63946 | |||| ||||||| | | | || | | | || | | || | ||| | || || Sbjct 63626 AGCCGAGTTGAGCTCCTCTGCGTGATCCTGGATGACCTTGTACACAG-AATCC--GAGAT 63570 Query 63947 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 64006 || || || || ||||| || || || || || || | | ||| |||| ||| | Sbjct 63569 CATAGGCTGGTGCTTGCCATTCTTTGGGTTGACGTATGTGTAGAGATCTTCCACGACTGC 63510 Query 64007 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAAT 64066 | ||| | || ||||| | |||||| |||||||||| || || | ||| || || || Sbjct 63509 AGAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGGGCTGCAAGGAT 63450 Query 64067 GGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115 ||| ||||| ||||| |||| | || || ||||||| | ||||| ||| Sbjct 63449 GGCGTAATCAGGATG-TGTGGTGGTCATGTAGGCTGCTGTCTCGGCGGCC 63401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804688739200