Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq50 172 7e-38 seq1363 91.5 2e-13 >seq50 Length=66349 Score = 172 bits (190), Expect = 7e-38 Identities = 582/890 (65%), Gaps = 16/890 (2%) Strand=Plus/Minus Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || ||||| | | |||||| |||| |||| || || ||||| || ||||| || ||| Sbjct 64282 GGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATC 64223 Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 || ||||| || | ||| | || | | ||||| || || ||||| ||| Sbjct 64222 CACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGA 64163 Query 66147 TCGAGGAACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || ||||| |||| | | ||| ||||| || || | ||| ||||| | | | || || Sbjct 64162 TCAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGG 64104 Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 || ||||| || ||||| || | ||| | ||| ||||| || || || | | ||| || Sbjct 64103 GCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGG 64044 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 ||| | ||| || ||||| || ||||| || || || ||| | |||||||| | Sbjct 64043 AATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAAT-TC 63985 Query 66326 ACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 66384 | | | ||||| || || || || | || ||||| || || || || | | Sbjct 63984 GGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTG 63925 Query 66385 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 66444 |||| ||||| || || || || || ||| |||| | | || || || |||||| | Sbjct 63924 TATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCT 63865 Query 66445 GGTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503 | | ||| ||| || ||||| || | || || || ||||| || || |||||| Sbjct 63864 GAGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGT 63806 Query 66504 GAAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 66562 || | |||| | || |||||||| || || || ||| ||||| || || || Sbjct 63805 GACATGTAG-TCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGC 63747 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 ||||||||| | |||||| || || | ||| | | |||| | ||| | | ||| Sbjct 63746 GACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAGGTA 63687 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || || | || || || ||||| | | ||| |||||||| ||||| | || Sbjct 63686 TGAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACACTAT 63627 Query 66683 AACCGAGTTGAGTTTAT---CCTTATATTTGTTAACTACATCCATGGTAATACTTGAAAT 66739 | |||||||||| | | | | || | | | || | || | ||| | || || Sbjct 63626 AGCCGAGTTGAGCTCCTCTGCGTGATCCTGGATGACCTTGTACACAG-AATCC--GAGAT 63570 Query 66740 AATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTC 66799 || || || || ||||| || || ||||| || || | | ||| |||| ||| | Sbjct 63569 CATAGGCTGGTGCTTGCCATTCTTTGGGTTGACGTATGTGTAGAGATCTTCCACGACTGC 63510 Query 66800 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAAT 66859 | ||| | || ||||| | ||||| ||||||||||| || || | || || | || Sbjct 63509 AGAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGGGCTGCAAGGAT 63450 Query 66860 GGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 66908 ||| ||||| ||||| |||| | || || ||||||| | ||||| ||| Sbjct 63449 GGCGTAATCAGGATG-TGTGGTGGTCATGTAGGCTGCTGTCTCGGCGGCC 63401 >seq1363 Length=52244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||| ||| | |||||||| | | || | |||||||| || || || Sbjct 38597 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGA 38538 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || |||||||| || ||||| || ||||| |||||||||||| ||||| Sbjct 38537 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAG 38478 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAA 36302 || || || || || || || |||| Sbjct 38477 ATACCCTCGACGGCAGCGAATGCAA 38453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159307457600