Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1500 114 1e-20 seq50 96.9 3e-15 >seq1500 Length=44508 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| |||| ||| | || ||||| | ||| ||||| || || ||||| |||||| Sbjct 4685 TGACCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCG 4744 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || || ||| || || || ||||||||| |||| ||||| ||||| || ||| Sbjct 4745 GCAAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGA 4804 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | || | |||| | || | || ||| | | || Sbjct 4805 GGGATACCCTCCTTGTCC-TGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTC 4863 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| | || | |||||||||||| | || || ||||| ||||||||| Sbjct 4864 CACCTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATA 4915 >seq50 Length=66349 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 154224 ACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTA 154283 ||||| | ||||||||||| || |||||||||| ||| || || | ||| | Sbjct 63979 ACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCG 63920 Query 154284 TAGATACCACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAACATGAACTCATCTGCGG 154342 |||||||| |||||| || | ||| || || ||||| |||||| |||||| || Sbjct 63919 TAGATACCGTCAATGCTGTCCTCCTTCAT-ATCGATGAGGAAGCATGAAGACATCTGAGG 63861 Query 154343 AGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTA-CATCTTTGTGCTCA 154401 | |||||||| ||| |||| ||||| ||||| ||| | || |||||| || Sbjct 63860 CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTG-ACA 63802 Query 154402 AAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATAC 154461 | | ||| | || ||||| || |||||||| || || ||||| | ||| | || Sbjct 63801 TGTAGTCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACAC 63742 Query 154462 GCATGTGCATGTGTTG 154477 ||||| |||||||||| Sbjct 63741 GCATGAGCATGTGTTG 63726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053830688000