Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq50 196 7e-45 seq1363 105 1e-17 >seq50 Length=66349 Score = 196 bits (216), Expect = 7e-45 Identities = 596/905 (66%), Gaps = 16/905 (2%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| || ||||| | | |||||| || | |||| || || ||||| Sbjct 64297 CCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATG 64238 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || ||||| || ||||| ||||| || ||||| | || | | |||||| || || Sbjct 64237 AACAGATCGGGGATCCACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCG 64178 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATAT 80069 ||||| ||||| ||||| |||| | | ||| | ||||| || || | ||| || Sbjct 64177 TGGTTCTTGCGGAGATCAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAAT 64119 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 ||| | | | || || || ||||| || ||||| || | ||| | ||| ||||| || || Sbjct 64118 GGCAAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTA 64059 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 || | | ||| ||||| | ||| || ||||| || ||||| || || || || Sbjct 64058 CACACGGAGCATAGGAATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCC 63999 Query 80190 ACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | | |||||||| | | | | ||||| || || || || | || ||||| || | Sbjct 63998 AGTAGCACGAAT-TCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGG 63940 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | || || | ||||| ||||| || || ||||| || || |||| | | || | Sbjct 63939 CACAGGTCTTGAGTGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGA 63880 Query 80309 AACAGCTAGACATTTGGTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 | || |||||| || | ||| ||| || ||||| || | || || || ||||| Sbjct 63879 AGCATGAAGACATCTGAGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGT 63821 Query 80368 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 80426 || || |||||| |||| |||| | || |||||||| || || || ||| Sbjct 63820 GTGAAGTATTTTTGTGACATGTAG-TCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCC 63762 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 ||||| || || ||||||||||| | |||||| || || | ||| | | |||| || Sbjct 63761 GTGAATACCAACAGCGACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATC 63702 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 ||| | | ||| || || | || || || ||||| | | ||| ||||| Sbjct 63701 TATGCGGAGGAGGTATGAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTC 63642 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTAT---CCTTATATTTGTTAACTACATCCAT 80603 ||| ||||| | ||| |||||||||| | | | | || | | | || | || Sbjct 63641 TCGGTCGTACACTATAGCCGAGTTGAGCTCCTCTGCGTGATCCTGGATGACCTTGTACAC 63582 Query 80604 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 80663 | || | || || || || || || ||||| || || || || || || | | Sbjct 63581 AG-AATCC--GAGATCATAGGCTGGTGCTTGCCATTCTTTGGGTTGACGTATGTGTAGAG 63525 Query 80664 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 80723 ||| |||| ||| || ||| | || ||||| | |||||| ||||||||||| || || Sbjct 63524 ATCTTCCACGACTGCAGAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGAT 63465 Query 80724 TCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 80782 | ||| || | ||||| ||||| ||||| |||| | || || ||||||| | |||| Sbjct 63464 ACGGGCTGCAAGGATGGCGTAATCAGGATG-TGTGGTGGTCATGTAGGCTGCTGTCTCGG 63406 Query 80783 CTGCC 80787 | ||| Sbjct 63405 CGGCC 63401 >seq1363 Length=52244 Score = 105 bits (116), Expect = 1e-17 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||| |||||||| | | || || |||||||| || || || Sbjct 38597 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGA 38538 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || |||||||| || ||||| || ||||| |||||||| ||| |||||| Sbjct 38537 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAG 38478 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGT 50136 || || || || || || || ||||| || | | || | ||| | | |||| Sbjct 38477 ATACCCTCGACGGCAGCGAATGCAACGAGACGGTTGGCAAAGGTGGAGTTCTTGTCAGAG 38418 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||||| ||||||| ||||||||||| Sbjct 38417 ATCCATCGCAGAGCCCAGTCGGCCTTCTT 38389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254075489600