Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq50 185 1e-41 seq1363 91.5 2e-13 >seq50 Length=66349 Score = 185 bits (204), Expect = 1e-41 Identities = 772/1192 (65%), Gaps = 30/1192 (3%) Strand=Plus/Minus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 || ||||| ||| || ||||| ||||| || ||||||| || | | || | | ||| Sbjct 64577 CAGGGCAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAAT 64518 Query 71754 TTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 || ||||| || || |||| ||| || || || || | || || ||||| Sbjct 64517 CTCCGTGCACAGGTTGGAGCTACG---GATAGTGCCCAAGTTCTTCTGGTTGCTCTTACG 64461 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||| || |||||||| || || ||||| || |||||||||| |||| | ||| | || Sbjct 64460 GTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGAT 64401 Query 71871 CGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCT-CTT-TCGTAT 71928 || | ||| | | || | | | ||| | || | |||| ||| ||||| Sbjct 64400 GGCGTACCACA-GCTTCTGGGCGCGGACAGTTTCACGGCCCT-TGTTCTGCTTCTCGTAG 64343 Query 71929 -TGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCAT 71986 | | ||| | | | || ||||| || || | | | | | || || || || | Sbjct 64342 CTCTCGTACAGAGCC--TCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGT 64285 Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046 | || ||||| | | |||||| || | || | || || ||||| || ||||| || | Sbjct 64284 TGGGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGA 64225 Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||| ||||| || ||||| | || | | |||||| || || ||||| | Sbjct 64224 TCCACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGA 64165 Query 72107 GATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 72165 |||| ||||| |||| | | ||| | ||||| || || | ||| ||||| | | | || Sbjct 64164 GATCAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCG 64106 Query 72166 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 72225 || || ||||| || ||||| || | ||| | ||| ||||| || || || | | ||| Sbjct 64105 GGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATA 64046 Query 72226 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 72285 ||||| | ||| || |||| || ||||| || || || ||| | |||||||| Sbjct 64045 GGAATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAAT- 63987 Query 72286 TTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344 | | | | | ||||| || || || || | || ||||| || || || || | Sbjct 63986 TCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAG 63927 Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 ||||| ||||| || || || || || ||| |||| | | || || || |||||| Sbjct 63926 TGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACAT 63867 Query 72405 TTGGTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 72463 || | ||| ||| || ||||| || | || || || ||||| || || |||||| Sbjct 63866 CTGAGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTT 63808 Query 72464 CAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 |||| |||| | || |||||||| || || || ||| || || || || Sbjct 63807 GTGACATGTAG-TCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACA 63749 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 ||||||||||| | ||| || || || | ||| | | |||| || ||| | | | Sbjct 63748 GCGACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAGG 63689 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || || | || || || ||||| | | ||| |||||||| ||||| | Sbjct 63688 TATGAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACACT 63629 Query 72643 ATAACCGAATTGAGTTTAT---CCTTATATTTGTTAACTATATCCATGGTGATACTTGAA 72699 ||| |||| ||||| | | | | || | | | || | | || | || | || Sbjct 63628 ATAGCCGAGTTGAGCTCCTCTGCGTGATCCTGGATGACCTTGTACACAG-AATCC--GAG 63572 Query 72700 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 72759 || || || || || ||||| || || || || || || | | ||| |||| ||| Sbjct 63571 ATCATAGGCTGGTGCTTGCCATTCTTTGGGTTGACGTATGTGTAGAGATCTTCCACGACT 63512 Query 72760 TCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 72819 || ||| | || ||||| | |||||| ||||||||||| || || | ||| || || Sbjct 63511 GCAGAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGGGCTGCAAGG 63452 Query 72820 ATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCTGCC 72870 ||||| ||||| ||||| |||| | || || ||||||| | || || ||| Sbjct 63451 ATGGCGTAATCAGGATG-TGTGGTGGTCATGTAGGCTGCTGTCTCGGCGGCC 63401 Score = 107 bits (118), Expect = 3e-18 Identities = 199/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || |||||||| |||| || ||||| | || || || ||||||||| Sbjct 65491 TCCTGGTCGACAGTGAACTGAATTGGAGCAGAGGCGGCCATGGTGCGGAGGTAGTACATG 65432 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || ||||| || |||||||| ||| ||||| || | ||| | | Sbjct 65431 CCGGTCTTGAGACCAAGCTTCCATCCGGCAAAGTGCATCGAGGTGATCTTGCCCATGGTT 65372 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || |||||||| |||| |||||| ||||| ||||| || || | ||| ||| Sbjct 65371 GGCTCCTTCATGTGAATGTTCAGCGACTGTGACTGATCAATGAAAGCACCACGGTCAGCA 65312 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | ||||| || || | |||||||||| || || || | ||| | Sbjct 65311 GCCATCTGAATGATGGTTCGCTGCGAGATTTCCCAAACGGTCTTGTAGAGCGTCTTGGTC 65252 Query 71029 TCTTCTGGAAGGTT-TGTATTCT--GAATGGATCCACCATCTGCAATAAT 71075 || || || | ||| | ||||| |||||| ||||| || |||||||| Sbjct 65251 TCCTCAGGGATGTTGGGGATTCTTGCAATGGAACCACCCTCGGCAATAAT 65202 >seq1363 Length=52244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||||| ||||| || | | || | |||||||| || || || Sbjct 38597 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGA 38538 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || |||||||| || ||||| || || || |||||||||||| |||||| Sbjct 38537 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAG 38478 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209 || || || || || || || |||| Sbjct 38477 ATACCCTCGACGGCAGCGAATGCAA 38453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125441646400