Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1363 192 9e-44 seq50 158 2e-33 >seq1363 Length=52244 Score = 192 bits (212), Expect = 9e-44 Identities = 568/885 (64%), Gaps = 63/885 (7%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| |||| || || ||||| | ||||| ||||||| ||| Sbjct 37996 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAAGAAATCGATCTCTCC 38055 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| || |||| ||| | | ||| | | ||| || || || || || ||| Sbjct 38056 AAGGATCTCCACGACTGGAACAAGCGTCTCAATGACGACGAACGCTTCTTCATCTCCCAC 38115 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | | |||||||| || | ||||||||| ||||||||||| || ||| | || ||| Sbjct 38116 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTC 38175 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 || || | || || |||| ||||| ||||| ||||| |||||||| ||| Sbjct 38176 TCGAGCGAAGTACAAATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGAG 38235 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCAA 125318 || || ||||| || | ||||| || || |||| |||||| |||| || ||| Sbjct 38236 AATGTCCACTCTGAGACCTACTCCCTGCTCATCGACACATACATTAGCGAGCCCAGGCAG 38295 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGAC------ACGGTGC----------------- 125355 || | || || || ||||| || ||| | | ||| Sbjct 38296 CGCCAGTAC---CTTTTCAACGCCATTGACAACAGTAAGTTGCCCCACAACACGCTTCAA 38352 Query 125356 -----CGTCT--------------------ATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||| || || || ||||| | |||| | || Sbjct 38353 TTACGCGTCTAACGTGTCATAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGCGA 38412 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 |||||| |||| | || || | | ||| || | || || |||||||| ||||| ||| Sbjct 38413 TGGATCTCTGACAAGAACTCCACCTTTGCCAACCGTCTCGTTGCATTCGCTGCCGTCGAG 38472 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| || ||||| ||||||| |||||||||||||| || || ||| Sbjct 38473 GGTATCTTCTTCAGTGGATCATTTGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTGATG 38532 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || || || || | |||||| | || ||||| ||||||||| | ||| ||||| Sbjct 38533 CCTGGTCTTACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGACTTC 38592 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTC 125630 ||| || || || || ||| || | | | | ||||| | || ||| Sbjct 38593 GCCTGCCTGCTCTT------CTCTCT---TCTCAACACCCGCCCCAGCAAGGAGTCTGTC 38643 Query 125631 ATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG 125690 ||| | ||||| || || || || |||||||| || | ||| |||| || Sbjct 38644 CAGGCCATCATCACCGAGGCTGTTGCCATTGAGCAAGAGTTCCTTAGCGACGCCCTGCCA 38703 Query 125691 GTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGAT 125750 | || | ||||||||| |||||| |||||| ||||||| ||||| || || || Sbjct 38704 TGCGCTTTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGAC 38763 Query 125751 CGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810 ||||| || || || | |||| | ||| |||||| ||| ||||| || ||| Sbjct 38764 CGTCTGCTTCTCGCTCTGGGCAACACCAAGGTCTACCACGCCACGAACCCCTTCGACTTC 38823 Query 125811 ATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| | ||| || || | || ||||||||||| ||||||||| Sbjct 38824 ATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAG 38868 >seq50 Length=66349 Score = 158 bits (174), Expect = 2e-33 Identities = 356/527 (68%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 96834 CCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCGGCAATAAACG 96892 || |||||| | ||||||| || || | || ||||| ||||| ||||| || || Sbjct 64044 CCTATGCTCCGTGTGTACAACAACACTG-CTCGCTACGTCGACCAGGGTGGCAACAAGCG 64102 Query 96893 GCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGA 96952 || || ||| | ||| | ||| | || || |||||||| || || |||| ||| | || Sbjct 64103 CCCCGGTGCTTTTGCCATTTACCTTGAGCCATGGCACGCCGATGTCTTTGGCTTCCTTGA 64162 Query 96953 GATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTG 97012 | ||||| ||| ||| || |||| || ||| | || |||| || || || || Sbjct 64163 TCTCCGCAAGAACCACGGCAAAGAGGAGGTTCGCGCCCGTGATCTGTTCTACGCTCTGTG 64222 Query 97013 GGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCC 97072 | | || ||| ||||||||||||| ||| | || || | |||| || |||||||| Sbjct 64223 GATCCCCGATCTGTTCATGAAGCGTGTCCAGGAGAACGGGGAGTGGACTCTCATGTGCCC 64282 Query 97073 CGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGC 97132 | || || ||||| || | || || || || ||||||||||| |||| | Sbjct 64283 CAACGAGTGCCCCGGCCTCGCTGACGTCTACGGTGATGAGTTTGAGGCTCTGTACGAGAG 64342 Query 97133 CTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACGAGAA-CTGTGGAAGGCC 97190 ||||||| | || | | ||||| || ||| || | |||| |||||| | ||| Sbjct 64343 CTACGAGAAGCAGAACAAGGGCCGTGAAAC-TGTCCGCGC-CCAGAAGCTGTGGTACGCC 64400 Query 97191 ATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAAT 97250 ||| | || ||| || ||||| | || | || |||||||||||| | || Sbjct 64401 ATCCTCGAAGCCCAGACCGAAACTGGTAACCCCTTTATGCTCTACAAGGATGCTTGCAAC 64460 Query 97251 CGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATT 97310 || || |||||||| |||||||||| ||| ||||||| ||||||||||| ||| Sbjct 64461 CGTAAGAGCAACCAGAAGAACTTGGGCACTATCCGTAGCTCCAACCTGTGCACGGAGATT 64520 Query 97311 GTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 || |||||| | | || || ||| || |||||| ||| || || Sbjct 64521 GTCGAGTACACTGCCCCTGATGAGGTTGCTGTTTGCAATCTTGCTTC 64567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044008286400