Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1500 89.7 4e-13 >seq1500 Length=44508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574 ||| || || || ||| |||||| || ||||||||||| || || ||| || ||||| Sbjct 4705 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC-AAGCGTC-CTGCCGTCC 4762 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || || |||||||| | | || | ||||||||| || || | || ||||||||| Sbjct 4763 TCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 4822 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| ||| ||| | | ||||||||| | || ||| ||| | || || || Sbjct 4823 TGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACCTCCAAAGTAATCGTC 4882 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| || || || || ||||| Sbjct 4883 TTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| ||||||||||| || | ||| || || ||||||| |||||||| ||| || | Sbjct 5464 TCCTTCTGAATGTTGTAGTC-GGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 5522 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || ||||||||||| || || | | ||||||||| ||| ||| ||||| | Sbjct 5523 GATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATT 5582 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGA 48704 | ||||| |||| ||||| ||||| || ||||| || ||||||| Sbjct 5583 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGA 5632 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || || | ||| ||||||| || ||||| ||| || | Sbjct 5179 CTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAA 5238 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | ||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 5239 AATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 5298 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGA 48704 | ||||| |||| ||||| ||||| |||||||| || ||||||| Sbjct 5299 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTTCCGGTGA 5348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421242780241640