Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq50 197 2e-45 >seq50 Length=66349 Score = 197 bits (218), Expect = 2e-45 Identities = 775/1193 (65%), Gaps = 32/1193 (3%) Strand=Plus/Minus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 || ||||| ||| || ||||| ||||| || ||||||| || | | || | | || Sbjct 64577 CAGGGCAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAAT 64518 Query 62948 CTCAGTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 ||| ||||| || || |||| |||||| || || || | || || ||||| Sbjct 64517 CTCCGTGCACAGGTTGGAGCTACG---GATAGTGCCCAAGTTCTTCTGGTTGCTCTTACG 64461 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 ||| || |||||||| || || || || || |||||||||| |||| | ||| | || Sbjct 64460 GTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGAT 64401 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT-TTCT-CTT-TCGTA 63121 || | ||| | | || | | | || || | | | |||| ||| ||||| Sbjct 64400 GGCGTACCACA-GCTTCTGGGCGCGG--ACAGTTTCACGGCCCTTGTTCTGCTTCTCGTA 64344 Query 63122 --TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 63179 | ||| | | | || ||||| || || | || | | | || || || || Sbjct 64343 GCTCTCGTACAGAGCC--TCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCG 64286 Query 63180 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63239 | || ||||| | | |||||| |||| |||| || || ||||| || ||||| || Sbjct 64285 TTGGGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGG 64226 Query 63240 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63299 ||||| ||||| || ||||| | || | | ||||| || || ||||| Sbjct 64225 ATCCACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGG 64166 Query 63300 AGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63358 ||||| ||||| |||| | | ||| | ||||| || || | ||| ||||| | | | || Sbjct 64165 AGATCAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACC 64107 Query 63359 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63418 || || ||||| || ||||| || | ||| | ||| ||||| || || || | | ||| Sbjct 64106 GGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCAT 64047 Query 63419 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 ||||| | |||||||||| | || ||||| || || || ||| | |||||||| Sbjct 64046 AGGAATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAAT 63987 Query 63479 ATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537 | | | | ||||| || || || || | || ||||| || || || || | Sbjct 63986 -TCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGA 63928 Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63597 || || |||||||| || ||||| || || |||| | | || || || ||||| Sbjct 63927 GTGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACA 63868 Query 63598 TTTGGTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63656 | || | ||| ||| || ||||| || | || || || ||||| || || ||||| Sbjct 63867 TCTGAGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTT 63809 Query 63657 TCAGAAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 63715 | || | |||| | || |||||||| || || || ||| ||||| || || Sbjct 63808 TGTGACATGTAG-TCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAAC 63750 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 ||||||||||| | |||||| || || | ||| | | |||| | ||| | | Sbjct 63749 AGCGACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAG 63690 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835 ||| || || | || || || ||||| | | ||| |||||||| ||||| | Sbjct 63689 GTATGAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACAC 63630 Query 63836 AATAACCGAGTTGAGTTTAT---CCTTATATTTGTTAACTATATCCATGGTGATACTTGA 63892 ||| |||||||||| | | | | || | | | || | | || | || | || Sbjct 63629 TATAGCCGAGTTGAGCTCCTCTGCGTGATCCTGGATGACCTTGTACACAG-AATCC--GA 63573 Query 63893 AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 63952 || || || || || ||||| || || || || || || | | ||| |||| || Sbjct 63572 GATCATAGGCTGGTGCTTGCCATTCTTTGGGTTGACGTATGTGTAGAGATCTTCCACGAC 63513 Query 63953 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 64012 | || ||| | || ||||| | |||||| ||||||||||| || || | ||| || || Sbjct 63512 TGCAGAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGGGCTGCAAG 63453 Query 64013 AATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064 ||||| ||||| ||||| |||| | || || ||||||| | ||||| ||| Sbjct 63452 GATGGCGTAATCAGGATG-TGTGGTGGTCATGTAGGCTGCTGTCTCGGCGGCC 63401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934429582400