Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq50 379 5e-100 >seq50 Length=66349 Score = 379 bits (420), Expect = 5e-100 Identities = 1166/1779 (66%), Gaps = 38/1779 (2%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 |||||| | ||| || ||||| || || |||| | ||| ||| || ||||| Sbjct 63669 AAGACGCTTGAGCGTTCATACCTCCTCCGCATAGATGGCAAGGTTGCTGAGCGTCCGCAA 63728 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | |||||||| ||| ||||||| || || ||| |||| || ||||| Sbjct 63729 CACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCGAGGACATTGAGAAGGCCATTGAG 63788 Query 363520 ACATATAAGCTTCTAAGTG-CTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAATG 363577 || ||| | || | | || | || ||||| |||||| | || ||| ||| ||||| Sbjct 63789 ACCTATGA-CTAC-ATGTCACAAAAATACTTCACACACGCCTCACCGACACTGTTCAATG 63846 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 | || |||| || ||||||||||| ||||| || | | |||||||| || || Sbjct 63847 CAGGCACTCCCTCGCCTCAGATGTCTTCATGCTTCCTCATCGATATGAAGGAGGACAGCA 63906 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 | || ||||||| || ||||| |||| ||||| | || ||||||| || ||||| | Sbjct 63907 TTGACGGTATCTACGATACACTCAAGACCTGTGCCTTGATCTCCAAGACCGCTGGCGGTA 63966 Query 363698 TTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGG 363755 ||||| | | || ||||| ||||||| || | | |||||| | ||||| || Sbjct 63967 TTGGTCTCAACG-TCCACCGAATTCGTGCTACTGG-CTCATACATTGGTGGCACCAACGG 64024 Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815 | || || || || |||| ||||| ||||||| |||| ||||| | |||||||| Sbjct 64025 AACATCAAACGGTCTCATTCCTATGCTCCGTGTGTACAACAACACTGCTCGCTACGTCGA 64084 Query 363816 CCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGA 363875 ||||||||| |||||| || || ||||| || || || ||||| || ||||| Sbjct 64085 CCAGGGTGGCAACAAGCGCCCCGGTGCTTTTGCCATTTACCTTGAGCCATGGCACGCCGA 64144 Query 363876 TATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGA 363935 | | |||| || ||||| ||||| || ||| || |||||||| | || || ||||| Sbjct 64145 TGTCTTTGGCTTCCTTGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCGCGCCCGTGA 64204 Query 363936 TCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT---GGAGGCAGGTAA 363992 ||||||||| || || ||| | | || | || |||||||| || |||| || Sbjct 64205 TCTGTTCTACGCTCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCCAGGAGAACGG--- 64261 Query 363993 GAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 | | ||| | ||| | ||||| |||| || || || || | || || | ||||| || Sbjct 64262 GGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACGTCTACGGTGATGA 64321 Query 364053 CTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGC 364112 | || ||||| ||||| | || || | || |||| ||| | || | | ||| Sbjct 64322 GTTTGAGGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCGTGAAACTGTCCGCGC 64381 Query 364113 ACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTT 364172 |||||||| |||| |||||| | || | |||| || || || | |||| |||| | Sbjct 64382 CCAGAAGCTGTGGTACGCCATCCTCGAAGCCCAGACCGAAACTGGTAACCCCTTTATGCT 64441 Query 364173 GTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-A 364231 ||||| ||| | |||||||| ||| ||||||| || || | || || | || | || Sbjct 64442 CTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACTTGGGCACTA-TCCGTAGCT 64500 Query 364232 GCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACC 364291 |||||| || || |||||| | || ||||| || || || ||| ||| || || || | Sbjct 64501 CCAACCTGTGCACGGAGATTGTCGAGTACACTGCCCCTGATGAGGTTGCTGTTTGCAATC 64560 Query 364292 TTGCGTCGATCGCGCTTCCGGCGTTTG-----TAAAAG-ATGGTACTTTTGACCACCAGC 364345 |||| || | || || || | |||| || ||| ||| |||||| |||| Sbjct 64561 TTGCTTCTCTTGCCCTGCCCTCTTTTGTTGACTACAAGCGTGGCGAGTTTGACTTCCAGA 64620 Query 364346 ATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATT 364405 | ||| | || || ||| | || || |||| | ||||| | || || || Sbjct 64621 AGCTTCACGAGGTCACCCAGGTTGTCACCCGCAACTTGAACAAGATCATTGAAGTCAACC 64680 Query 364406 ATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTG 364465 | || || || || || || || | ||||| || || || ||| | || | Sbjct 64681 ACTACCCCGTTGAGGAGGCACGCCGCAGCAACTTCCGTCACCGACCTATCGGTATGGGCG 64740 Query 364466 TACAGGGCCTCGCTGACGTTTTTAT---GATGCTCAAGATGGCATTTGATTCGCCTGACG 364522 |||| || || || || | ||| | ||| | || | || || ||| | || | Sbjct 64741 TACAAGGTCTGGCCGATGCTTTCCTCGCATTGCGC---CTGCCTTTCGAGTCGGCAGAGG 64797 Query 364523 CTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGT 364582 | || || | ||||||| || || || || || || | ||| |||| | Sbjct 64798 CCAAGAAGCTCAACATCCAGATCTTCGAGACCATCTACCACGCTGCTCTTACTTCTTCCT 64857 Query 364583 GTGA-TTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAG 364641 | || ||| ||| | | || | || || || ||||| || || |||| ||| Sbjct 64858 GCGACATTGCCAAGGAGCTTGGTCCA-TATGAGACCTACGAGGGATCTCCCGTTTCTCAG 64916 Query 364642 GGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACG 364701 |||| | |||| ||| | ||||| ||||| || | | || ||| |||||| | Sbjct 64917 GGAACCCTTCAGTACGATATGTGGAACGTCACCCCCACCGACCTCTGGGACTGGGCAGAG 64976 Query 364702 CTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCC 364761 | |||| || | |||||| |||||||| | | | || |||||||| Sbjct 64977 TTGAAGGCCAAGATTGCTCAACATGGTGTACGCAACTCTTTGTTGATCGCTCCCATGCCA 65036 Query 364762 ACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAAT 364821 || || || || | ||||| |||||||||||||| |||||||| |||| ||| || Sbjct 65037 ACTGCCTCGACCTCCCAGATTCTCGGAAACAACGAATGCTTCGAGCCGTACACATCTAAC 65096 Query 364822 CTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAG 364881 | || || || || || || | || || || | ||| || || | || ||||| Sbjct 65097 ATCTACTCTCGACGTGTGCTCGCGGGTGAGTTCCAGGTTGTCAACCCATGGCTGCTCAAG 65156 Query 364882 GATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAAT 364941 ||||| |||| || |||||| ||| | |||||||||| || || |||| | Sbjct 65157 GATCTCGTCGACATGGGCCTGTGGTCTGAGAACATGAAGAACCGCATTATTGCCGAGGGT 65216 Query 364942 GGTT-CTGTGCAGAACATTCCAGGATTTCC---AGAAGATCTGAAGCCTATTTACAAAAC 364997 |||| | ||| || | ||| | ||| || ||| | ||| | | ||||| || Sbjct 65217 GGTTCCATTGC--AAGAATCCCCAACATCCCTGAGGAGACC--AAGACGCTCTACAAGAC 65272 Query 364998 CGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTAT 365057 ||| |||||||| || |||||| ||||| | ||||| || || || |||||||| || Sbjct 65273 CGTTTGGGAAATCTCGCAGCGAACCATCATTCAGATGGCTGCTGACCGTGGTGCTTTCAT 65332 Query 365058 CTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATC 365117 |||| |||||| | ||| | ||||| |||||||| | |||| | || || Sbjct 65333 TGATCAGTCACAGTCGCTGAACATTCACATGAAGGAGCCAACCATGGGCAAGATCACCTC 65392 Query 365118 CATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||| || ||| ||||| ||||| ||||| || Sbjct 65393 GATGCACTTTGCCGGATGGAAGCTTGGTCTCAAGACCGG 65431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303326213282480