Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq50 129 6e-25 seq1500 118 1e-21 seq1257 107 2e-18 seq400 89.7 5e-13 >seq50 Length=66349 Score = 129 bits (142), Expect = 6e-25 Identities = 919/1461 (63%), Gaps = 65/1461 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | |||||| || | || | |||||| ||| | || Sbjct 65140 TTGACAACCTGGAACTCACCCGCGAGCACACGTCGAGAGTAGATGTTAGATGTGTACGGC 65081 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | ||||| || || || || || | ||||| || || |||||| || | | Sbjct 65080 TCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGCATGGGAGCGATC 65021 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATG--TCTT--CCTTTAGCGTACCCCAATC 145233 || || || ||||| | || || |||| |||| |||| | | |||| || Sbjct 65020 AACAAAGAGTTGCGTACACCATG----TTGAGCAATCTTGGCCTTCAACTCTGCCCAGTC 64965 Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 ||| || || || | |||| |||||| |||||||| | | |||| |||| Sbjct 64964 CCAGAGGTCGGTGGGGGTGACGTTCCACATATCGTACTGAAGGGTTCCCTGAGAAACGGG 64905 Query 145294 -GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTC 145350 | | ||| | | | | || || ||||| | ||||| | ||||| | Sbjct 64904 AGATCCCTCGTAGGTCTCA-TA--TGGACCAAGCTCCTTGGCAATGTCGCAGGAAGAAGT 64848 Query 145351 CAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCT 145410 ||||| || || || |||||| || || |||||||| | | || || | Sbjct 64847 AAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGCCGA 64788 Query 145411 CTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGAT 145470 |||| | |||| ||||| | ||||||||||| || || |||| |||| ||||| Sbjct 64787 CTCGAAAGGCAGGCGCAATGCGAGGAAAGCATCGGCCAGACCTTGTACGCCCATACCGAT 64728 Query 145471 GGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || || || | |||||| | ||| ||| | || || | || || || Sbjct 64727 AGGTCGGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACGGGGTAGTGGTTGACTTCAAT 64668 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 || || |||||||| || || |||| || | | | | ||| | |||||||| Sbjct 64667 GATCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCAAA 64608 Query 145591 C---CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 | | | || || | || | | || | ||| | || || | ||| ||||| Sbjct 64607 CTCGCCACGCTTGTAGTCAACAAAAGAGGGC---AGGGCAAGAGAAGCAAGATTGCAAAC 64551 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTG---CTACATTT 145704 || ||| || | | | |||| | || ||||| | ||||| ||| |||| Sbjct 64550 AGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGGTTGGAGCTACG--- 64494 Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTA 145764 ||| || |||| || | ||| || || || | |||||| || |||||||||||||| | Sbjct 64493 GATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAGAGCATAAA 64434 Query 145765 CGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGC 145822 || ||||| || ||| | || | ||| || || || | ||| || || Sbjct 64433 GGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGG--CGTACCACAGCTTCTGGGCGCGG 64376 Query 145823 ACCTGCTGCTGGTAGCGGCCCTC-TTCT-----TCGTATTTCCTGTAGAGCTCCTCAAAC 145876 || | | | ||||||| |||| ||||| || ||| || |||||||| Sbjct 64375 ACA----GTT--TCACGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCCTCAAAC 64322 Query 145877 GCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACG 145936 | ||||||| || | |||||||| |||| |||||| ||||| || | ||| | Sbjct 64321 TCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCC 64262 Query 145937 CCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCG 145996 ||||| | | ||| |||| ||| |||| ||| || | |||||| ||||| | || || Sbjct 64261 CCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAGATCA 64202 Query 145997 CGCGCTTTGCAATCCTCAGCAC--CCATGTTTCGCTTC--AAATTAAGCACACTATAGAT 146052 || || || | |||| | || || ||| | | | || ||| | | | ||| Sbjct 64201 CGGGC---GCGAACCTCCTCTTTGCCGTGGTTCT-TGCGGAGATCAAGGAAGCCAAAGAC 64146 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTG 146109 || |||||||| || |||| || | ||| | || || || ||| |||||||| Sbjct 64145 ATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCCTG 64086 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 ||| |||| || | ||||||| | || || | ||| || || ||| | | | Sbjct 64085 GTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGATGT 64026 Query 146170 GCCGTTCGTAG----AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 ||||| || | | ||| | ||| | || | | || || || | | Sbjct 64025 TCCGTTGGTGCCACCAATGTAT----GAGCCAGTAGCACGAATTCGGTGGACGTTGAGAC 63970 Query 146226 CGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGT 146285 | | |||||| || |||||| || ||| ||| ||| || |||||||| |||| Sbjct 63969 CAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGT 63910 Query 146286 CAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGT 146343 ||||||| || |||| || ||| || ||||| || ||||||| | | || || Sbjct 63909 CAATGCTGTCCTCCTTCATAT--CGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGT 63852 Query 146344 CCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATA 146403 || || ||||| ||||| ||||| || || |||| | ||| ||| Sbjct 63851 GCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATA 63792 Query 146404 CGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCAT 146463 || || || || | | |||||| ||||| ||||| || | |||||| ||||||||||| Sbjct 63791 GGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCAT 63732 Query 146464 GTGTTGGGGCCGCTCCGCCAC 146484 |||||| || ||||| || || Sbjct 63731 GTGTTGCGGACGCTCAGCAAC 63711 >seq1500 Length=44508 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| || ||||| ||||||||||| ||| Sbjct 5428 CCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 5487 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 5488 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 5547 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || |||| |||||| | Sbjct 5548 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACC 5607 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 5608 TCGAGGGTGATGGTCTTGCCGGT 5630 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||||||||||| || || ||||| ||| Sbjct 4916 CCACCACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCA 4975 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||||||||| || |||| | ||| |||||||| ||||| Sbjct 4976 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGA 5035 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || ||||| | || | |||||| | ||||||| Sbjct 5036 ATACCTTCCTTGTC-CTGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGAC 5094 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 5095 CTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | || |||||||| ||||||||||| ||| Sbjct 5144 CCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCA 5203 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || ||||| || ||| | || | ||||||||||||||| || Sbjct 5204 AGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 5263 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| |||||| | Sbjct 5264 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACC 5323 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 5324 TCGAGGGTTATGGTCTTTCCGGT 5346 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | || |||||||| || |||||||||||| Sbjct 4688 CCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4747 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| || ||||| || || |||| | |||||||||||| |||||| Sbjct 4748 AGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 4807 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | |||||| | || || | Sbjct 4808 ATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACC 4867 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| ||||| || ||||| || ||||| Sbjct 4868 TCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 >seq1257 Length=334001 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||||||||| || |||||||| ||| Sbjct 8920 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 8861 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| | ||||||||||||||| || Sbjct 8860 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 8801 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 8800 ATGCCCTCCTTGTC 8787 >seq400 Length=67953 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || |||||||| || |||||||| ||| Sbjct 23248 CCACCACGGAGACGGAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCA 23307 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || ||| |||| | |||||||||||||| || Sbjct 23308 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 23367 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 23368 ATGCCTTCCTTGTC 23381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472003123737600