Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq50 194 2e-44 seq1363 91.5 2e-13 >seq50 Length=66349 Score = 194 bits (214), Expect = 2e-44 Identities = 772/1189 (65%), Gaps = 32/1189 (3%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| ||| || ||||| ||||| || ||||||| || | | || | | ||||| Sbjct 64573 GCAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCC 64514 Query 62807 GTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 62863 ||||| || || |||| ||| || || || || | || || ||||| ||| Sbjct 64513 GTGCACAGGTTGGAGCTACG---GATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTG 64457 Query 62864 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 62923 || |||||||| || || || || || |||||||||| |||| | ||| | || || Sbjct 64456 CAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCG 64397 Query 62924 TTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT-TTCT-CTT-TCGTA--TA 62978 | ||| | | || | | | || || | ||| |||| ||| ||||| | Sbjct 64396 TACCACA-GCTTCTGGGCGCGG--ACAGTTTCACGGCCCTTGTTCTGCTTCTCGTAGCTC 64340 Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 ||| | | | || ||||| || || | || | | || || || || || | | Sbjct 64339 TCGTACAGAGCC--TCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGG 64282 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 | ||||| | | |||||| |||| |||| || || ||||| || ||||| || |||| Sbjct 64281 GGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCC 64222 Query 63099 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63158 | ||||| || ||||| | || | | ||||| || || ||||| |||| Sbjct 64221 ACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGAT 64162 Query 63159 CGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217 | ||||| |||| | | ||| | ||||| || || | ||| ||||| | | | || || Sbjct 64161 CAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGG 64103 Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277 || ||||| || ||||| || | ||| | ||| ||||| || || || | | ||| ||| Sbjct 64102 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGA 64043 Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA 63337 || | ||| || ||||| || ||||| || || || ||| | |||||||| | Sbjct 64042 ATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAAT-TCG 63984 Query 63338 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 | | | ||||| || || || || | || ||||| || || || || | || Sbjct 63983 GTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGT 63924 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456 ||| ||||| || || || || || ||| |||| | | || || || |||||| || Sbjct 63923 ATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTG 63864 Query 63457 GTGACGACT-AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAG 63515 | ||| ||| || ||||| || | || || || ||||| || || |||||| | Sbjct 63863 AGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTG 63805 Query 63516 AAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574 | | |||| | || |||||||| || || || ||| ||||| || || ||| Sbjct 63804 ACATGTAG-TCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCG 63746 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634 |||||||| | |||||| || || | ||| | | |||| | ||| | | ||| Sbjct 63745 ACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAGGTAT 63686 Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63694 || || | || || || ||||| | | ||| |||||||| ||||| | ||| Sbjct 63685 GAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACACTATA 63626 Query 63695 ACCGAGTTGAGTTTAT---CCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATA 63751 |||||||||| | | | | || | | | || | || | ||| | || || Sbjct 63625 GCCGAGTTGAGCTCCTCTGCGTGATCCTGGATGACCTTGTACACAG-AATCC--GAGATC 63569 Query 63752 ATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCA 63811 ||||| || || ||||| || || ||||| || || | | ||| |||| ||| || Sbjct 63568 ATAGGCTGGTGCTTGCCATTCTTTGGGTTGACGTATGTGTAGAGATCTTCCACGACTGCA 63509 Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 ||| | || ||||| | ||||| ||||||||||| || || | || || || ||| Sbjct 63508 GAGAATTGCTTCTTTGTCTGCTTGTGGAGATTTGATACAGCGATACGGGCTGCAAGGATG 63449 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919 || ||||| ||||| |||| | || || ||||||| | ||||| ||| Sbjct 63448 GCGTAATCAGGATG-TGTGGTGGTCATGTAGGCTGCTGTCTCGGCGGCC 63401 >seq1363 Length=52244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| | |||||||| | | || | |||||||| || || || Sbjct 38597 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGA 38538 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || |||||||| || ||||| || ||||| |||||||||||| ||||| Sbjct 38537 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAG 38478 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAA 32805 || || || || || || || |||| Sbjct 38477 ATACCCTCGACGGCAGCGAATGCAA 38453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619010544000