Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1363 127 2e-24 >seq1363 Length=52244 Score = 127 bits (140), Expect = 2e-24 Identities = 232/336 (69%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 93313 TAGTGTT-TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371 || |||| || || ||||| || ||||| | |||| | || | |||||||| | Sbjct 38329 TACTGTTGTCAATGGCGTTGAAAAGGTACTGGCGCTGCCTGGGCTCGCTAATGTATGTGT 38270 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 |||| | ||| || || | ||||| |||||||||||||| || ||||| ||||||| Sbjct 38269 CGATGAGCAGGGAGTAGGTCTCAGAGTGGACATTCTCCATCATGATCTGGAAGCCGTAGA 38210 Query 93432 AACATCTAGCTTCCGTGATCTGCACTT--CTTGAGAAAATCTCTCTACGAGATTTTCATT 93489 | |||| || || | ||| || |||| || |||||| | ||| || || || || || Sbjct 38209 AGCATCGTGCCTCAGGGATTTGTACTTCGCTCGAGAAA--CGCTCGACCAGGTTCTCGTT 38152 Query 93490 GACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG---CTTTATAAAATGTTTCTC 93546 ||| || |||||||| ||||| || || || | | || | | || ||| || Sbjct 38151 GACGATGCCATCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGTTCGTC 38092 Query 93547 ATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGT 93606 |||| | |||| | ||| ||| ||||| || || ||||||| |||||| | || Sbjct 38091 GTCATTGAGACGCTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCGATTTCTTCAGCGGT 38032 Query 93607 CCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 ||| || || || || || || |||||||| | ||| Sbjct 38031 CCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCA 37996 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || |||||||| || | || ||||| || || || | ||| ||| ||| || | Sbjct 38598 GCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAG 38539 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | ||| || || ||||||||||| || || || ||||| ||| || || Sbjct 38538 ACCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAA 38479 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 ||||| || ||||| || ||||| || | ||| | |||||| Sbjct 38478 GATACCCTCGACGGCAGCGAATGCAACGAGACGGTTGGCAAA 38437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849384353600