Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1363 118 2e-21 seq655 104 5e-17 seq986 89.7 1e-12 >seq1363 Length=52244 Score = 118 bits (130), Expect = 2e-21 Identities = 273/408 (67%), Gaps = 20/408 (5%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 38864 TCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTCGTG 38805 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAG-ATGCGGTCTGCCACAAACTCCAG 251681 || | ||| ||||| | ||| || || | |||| | ||||| || || ||||| | Sbjct 38804 GCGTGGTAGACCTTGGTGTTGCCCAGAGCGA-GAAGCAGACGGTCAGCAACGAACTCAAT 38746 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| | || | || || | || || | | Sbjct 38745 GTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAAAGCGCATGGCAGGGCGTCGCTAAG 38686 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || | || ||||||| ||||| | || |||| || |||| Sbjct 38685 GAACTCTTGCTCAATGGCAACAGCCTCGGTGATGATGGCCTGGAC---------AGACTC 38635 Query 251802 CTTGTT--CTCCAGCTTTGAGTACAG----GAGCTCGC---CAAACTGTTGGTGCAGACC 251852 |||| | | | ||||| | || |||| || | || | ||||| || Sbjct 38634 CTTGCTGGGGCGGGTGTTGAGAAGAGAGAAGAGCAGGCAGGCGAAGTCGGTGTGCATGCC 38575 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| ||| ||||| ||||||||| | | || |||||||||| ||||| ||| | Sbjct 38574 CTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGACCAGGCATCAGACCACGCTTCTT 38515 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||||||||| | ||| |||||| ||| | | ||||||||| Sbjct 38514 GAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAGATACCCTCGAC 38467 >seq655 Length=40325 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || |||||||| || || |||||||||||||||||||| || | || || || || || Sbjct 6286 GTCGGTTCTCTTTCCGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGTGCTATGCTCATG 6345 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||||||||| || |||||||| || || |||||| |||| ||||||| || Sbjct 6346 CGCGCCGATGTCCTTCTTCTTGATGAACCCACTAACCACTTGGATGTTGCCAACGTTGCA 6405 Query 279816 TGGCT 279820 ||||| Sbjct 6406 TGGCT 6410 >seq986 Length=77907 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| ||| | ||| || |||||||||| || || ||||| ||||| | Sbjct 63644 CCAACTTCGGTCTCGACGCTGAGCTTGTTTCTCACTCTCGTATGCGTGGTCTGTCTGGTG 63703 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| | | || |||| ||||||| ||| || ||||||| Sbjct 63704 GTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGCTCA-TGGCAACGCCCCCATTTGATCGTC 63762 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||| ||||| || ||||| || ||| || || ||| Sbjct 63763 CTCGACGAGCCTACTAACTACCTCGACCGTGACTCCCTTGGTGCCCTG 63810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027815202579240